[BioC] getAnnMap: package hugene10stv1 not available

Claudia [guest] guest at bioconductor.org
Sun Nov 3 22:15:34 CET 2013


I'm trying to analyze some array data with Bioconductor and I receive the following errore when I try to filter with GeneFilter: Error: getAnnMap: package hugene10stv1 not available.

This is the script I'm currently using:
mydata <- ReadAffy()
pData(mydata)<-read.table("phenodata.txt", header=T,
row.names=1, sep="\t")
eset <- rma(mydata)

Annotation is hugene10stv1. I have already installed hugene10stv1cdf and hugene10stv1probe packages but I receive the same error every time I try to filter my set.

Any help would be very much appreciated.

Thanks a lot

 -- output of sessionInfo(): 

> sessionInfo()
R version 3.0.2 (2013-09-25)
Platform: i386-w64-mingw32/i386 (32-bit)

[1] LC_COLLATE=Italian_Italy.1252  LC_CTYPE=Italian_Italy.1252   
[3] LC_MONETARY=Italian_Italy.1252 LC_NUMERIC=C                  
[5] LC_TIME=Italian_Italy.1252    

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
[1] hugene10stv1cdf_2.13.0 AnnotationDbi_1.24.0   genefilter_1.44.0     
[4] affy_1.40.0            Biobase_2.22.0         BiocGenerics_0.8.0    

loaded via a namespace (and not attached):
 [1] affyio_1.30.0         annotate_1.40.0       BiocInstaller_1.12.0 
 [4] DBI_0.2-7             IRanges_1.20.4        preprocessCore_1.24.0
 [7] RSQLite_0.11.4        splines_3.0.2         stats4_3.0.2         
[10] survival_2.37-4       tools_3.0.2           XML_3.98-1.1         
[13] xtable_1.7-1          zlibbioc_1.8.0      

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