[BioC] PREDA command does not work
Maria Arnedo Muñoz [guest]
guest at bioconductor.org
Wed Jun 26 13:54:15 CEST 2013
Hello!
I am working with the PREDA package. I upload the package but it gives me this error when it is uploading:
Error in loadNamespace(i[[1L]], c(lib.loc, .libPaths())) :
there is no package called âXMLâ
Error: package âannotateâ could not be loaded
Then when I try to work with the command statisticsForPREDAfromEset or another specific PREDA command the following error appears:
Error: could not find function "statisticsForPREDAfromEset"
Any suggestion?? I don't know what could be happened!
Thank you!
Best regards
Maria
-- output of sessionInfo():
R version 2.15.3 (2013-03-01)
Platform: x86_64-w64-mingw32/x64 (64-bit)
locale:
[1] LC_COLLATE=English_United Kingdom.1252
[2] LC_CTYPE=English_United Kingdom.1252
[3] LC_MONETARY=English_United Kingdom.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United Kingdom.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] pd.huex.1.0.st.v2_3.8.0 RSQLite_0.11.4 DBI_0.2-7
[4] oligo_1.22.0 oligoClasses_1.20.0 affy_1.36.1
[7] AnnotationDbi_1.20.7 multtest_2.14.0 lokern_1.1-3
[10] Biobase_2.18.0 BiocGenerics_0.4.0
loaded via a namespace (and not attached):
[1] affxparser_1.30.2 affyio_1.26.0 BiocInstaller_1.8.3
[4] Biostrings_2.26.3 bit_1.1-10 codetools_0.2-8
[7] ff_2.2-11 foreach_1.4.1 GenomicRanges_1.10.7
[10] IRanges_1.16.6 iterators_1.0.6 MASS_7.3-23
[13] parallel_2.15.3 preprocessCore_1.20.0 sfsmisc_1.0-23
[16] splines_2.15.3 stats4_2.15.3 survival_2.37-4
[19] xtable_1.7-1 zlibbioc_1.4.0
>
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