[BioC] error to load the library affycoretools

[Sean Davis]

On Tue, Jun 11, 2013 at 10:03 PM, Wang Peter <wng.peter at gmail.com> wrote:
> i met such error
>> library(affycoretools);
> Error in loadNamespace(imp[[1L]], c(lib.loc, .libPaths())) :
>   there is no package called ‘graph’
> Error: package/namespace load failed for ‘affycoretools’
>
>
> coding:
>
> *source*('http://Bioconductor.org/biocLite.R')<http://bioconductor.org/biocLite.R')>
> ;
>
> *biocLite*("gcrma");
>
> *biocLite*("graph");

Hi, Shan.

And what was the output of biocLite("graph")?

Sean


> *biocLite*("affycoretools");
>
> library (CLL);
>
> *library* (gcrma);
>
> *library*(affycoretools);
>
> sessionInfo()
> R version 2.15.1 (2012-06-22)
> Platform: x86_64-pc-mingw32/x64 (64-bit)
> locale:
> [1] LC_COLLATE=Chinese (Simplified)_People's Republic of China.936
> [2] LC_CTYPE=Chinese (Simplified)_People's Republic of China.936
> [3] LC_MONETARY=Chinese (Simplified)_People's Republic of China.936
> [4] LC_NUMERIC=C
> [5] LC_TIME=Chinese (Simplified)_People's Republic of China.936
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
> other attached packages:
>  [1] hgu95av2probe_2.10.0 hgu95av2cdf_2.10.0   KEGG.db_2.7.1
> GO.db_2.7.1
>  [5] RSQLite_0.11.4       DBI_0.2-7            AnnotationDbi_1.18.4
> gcrma_2.28.0
>  [9] BiocInstaller_1.4.9  CLL_1.2.12           affy_1.34.0
> Biobase_2.16.0
> [13] BiocGenerics_0.2.0
> loaded via a namespace (and not attached):
>  [1] affyio_1.24.0         annaffy_1.28.0        annotate_1.34.1
> biomaRt_2.12.0
>  [5] Biostrings_2.24.1     IRanges_1.14.4        limma_3.12.3
> preprocessCore_1.18.0
>  [9] RCurl_1.95-4.1        splines_2.15.1        stats4_2.15.1
> tools_2.15.1
> [13] XML_3.96-1.1          xtable_1.7-1          zlibbioc_1.2.0
> --
> shan gao
> Room 231(Dr.Fei lab)
> Boyce Thompson Institute for Plant Research
> Cornell University
> Tower Road, Ithaca, NY 14853-1801
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