[BioC] using a gtf file to map reads

[Valerie Obenchain]

Hi Mike (Love),

Would you be interested in contributing a disjointExons() to 
GenomicFeatures? I think this extraction would be useful to many. Maybe 
we also want a disjointExonsBy() but the only 'by' would be genes ...?

Valerie


On 06/05/2013 01:37 PM, Michael Lawrence wrote:
> Thanks for pointing that out, Simon. It would be great to get such
> documentation in a more conspicuous place.
>
> Michael
>
>
> On Wed, Jun 5, 2013 at 12:00 PM, Simon Anders <anders at embl.de> wrote:
>
>> Just to advertise a new piece of documentation: The vignette of the
>> "parathyroidSE" data package, written by Mike Love, now describes how to
>> get such count tables within R (i.e., without using our Python scripts),
>> using a method similar to he one discussed in this thread.
>>
>>    Simon
>>
>>
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