[BioC] preprocess core for quantile normalization

[Yashwant Kumar [guest]]

I have to run preprocess core for qantile normalization of my data. Data has protein name in column and peak intensity in row.

I have data of different time point. each time point has three replicates. I did all protein normalization for now but two time points are not behaving as expected. So I would like to do quantile normalization using for the data and this I don't want between replicates but between time points.

Please advise me how to do this. I can run R if you will explain me to matrix preparation. 

Best regards,
Yashwant

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