[BioC] Error: cannot allocate vector of size

[Martin Morgan]

On 07/15/2013 07:17 AM, Steve Lianoglou wrote:
> Or, perhaps running a 64-bit version of R would do the trick (assuming the
> OP) is on a 64bit machine
>
> Also the aroma affeyrix suite of packages might be helpful

or gcrma::justGCRMA, if you're not doing that already?

Martin

>
> HTH,
> -Steve
>
>
> On Monday, July 15, 2013, James W. MacDonald wrote:
>
>> You can solve the problem by installing more RAM or using a computer that
>> already has more RAM.
>>
>> Best,
>>
>> Jim
>>
>>
>>
>> On 7/15/2013 8:36 AM, chittabrata mal wrote:
>>
>>> Dear List,
>>> During GCRMA using simpleAffy package for some array data (>30) it is
>>> showing:
>>>
>>> "Error: cannot allocate vector of size 372.1 Mb"
>>>
>>> R environment is as follows:
>>> R version 3.0.1 (2013-05-16) -- "Good Sport"
>>> Copyright (C) 2013 The R Foundation for Statistical Computing
>>> Platform: i686-pc-linux-gnu (32-bit)
>>>
>>> The system has 4GB RAM. During running the GCRMA free memory size is more
>>> than 372.1 Mb.
>>>
>>> How may I solve this problem?
>>>
>>> With regards.
>>>
>>>          [[alternative HTML version deleted]]
>>>
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>>
>> --
>> James W. MacDonald, M.S.
>> Biostatistician
>> University of Washington
>> Environmental and Occupational Health Sciences
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>> Seattle WA 98105-6099
>>
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>


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