[BioC] about org.Hs.eg.db package install on linux
sk [guest]
guest at bioconductor.org
Wed Jul 10 14:02:01 CEST 2013
when I install "org.Hs.eg.db" package on Linux, there are some errors, I do not know why. Thanks!
-- output of sessionInfo():
Warning in gzfile(file, mode) :
cannot open compressed file '/home/comp/kaishi/R/x86_64-unknown-linux-gnu-library/3.0/org.Hs.eg.db/help/paths.rds', probable reason 'No such file or directory'
Error in gzfile(file, mode) : cannot open the connection
ERROR: installing Rd objects failed for package âorg.Hs.eg.dbâ
* removing â/home/comp/kaishi/R/x86_64-unknown-linux-gnu-library/3.0/org.Hs.eg.dbâ
The downloaded source packages are in
â/tmp/RtmpHRvkWg/downloaded_packagesâ
Warning messages:
1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package âorg.Hs.eg.dbâ had non-zero exit status
2: installed directory not writable, cannot update packages 'class', 'foreign',
'MASS', 'mgcv', 'nlme', 'nnet', 'spatial'
> sessionInfo()
R version 3.0.1 (2013-05-16)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=C LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods
[8] base
other attached packages:
[1] BiocInstaller_1.10.2 gcrma_2.32.0 affy_1.38.1
[4] preprocessCore_1.22.0 plyr_1.8 GEOquery_2.26.1
[7] Biobase_2.20.1 BiocGenerics_0.6.0
loaded via a namespace (and not attached):
[1] affyio_1.28.0 Biostrings_2.28.0 IRanges_1.18.1 RCurl_1.95-4.1
[5] splines_3.0.1 stats4_3.0.1 tools_3.0.1 XML_3.98-1.1
[9] zlibbioc_1.6.0
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