[BioC] Failed to obtain \'hguid\' cookie for UCSC browser session
Ania [guest]
guest at bioconductor.org
Sun Jul 7 14:37:00 CEST 2013
Dear All,
after I have updated my R and Bioconductor, the makeTranscriptDbFromUCSC function from GenomicFeatures package does not work anymore as it gives the following error: "Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie". I'm using Mac version 10.6.8, the software is updated. Here is the R code that led to an error:
>library(GenomicFeatures)
>supportedUCSCtables() ### the tables are listed
>getChromInfoFromUCSC("mm9", goldenPath_url = "http://hgdownload.cse.ucsc.edu/goldenPath") ### the chromosomes and their lengths are listed
> txdb = makeTranscriptDbFromUCSC(genome="mm9", tablename="refGene")
Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie
Does anyone know the solution to this problem? I would be really grateful for your help.
-- output of sessionInfo():
R version 3.0.1 (2013-05-16)
Platform: x86_64-apple-darwin10.8.0 (64-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] GenomicFeatures_1.12.2 AnnotationDbi_1.22.6 Biobase_2.20.1
[4] GenomicRanges_1.12.4 IRanges_1.18.1 BiocGenerics_0.6.0
loaded via a namespace (and not attached):
[1] biomaRt_2.16.0 Biostrings_2.28.0 bitops_1.0-5 BSgenome_1.28.0
[5] DBI_0.2-7 RCurl_1.95-4.1 Rsamtools_1.12.3 RSQLite_0.11.4
[9] rtracklayer_1.20.2 stats4_3.0.1 tools_3.0.1 XML_3.95-0.2
[13] zlibbioc_1.6.0
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