[BioC] IlluminaHumanMethylation450k.db: Missing probes in IlluminaHumanMethylation450kPROBELOCATION function?

Simone enomis.bioc at gmail.com
Tue Jul 2 11:17:39 CEST 2013


> Does anyone know why Jim's lines of code do not work on my R installation
> (R3.0.1)?
>
> library(FDb.InfiniumMethylation.hg19)
> x <- get450k()
> Error in `seqinfo<-`(`*tmp*`, value = NULL) :
>   the supplied 'seqinfo' must be a Seqinfo object
> In addition: Warning message:
> In if (is.na(genome(GR))) { :
>   the condition has length > 1 and only the first element will be used

Yes, I get exactly the same error with R version 3.0.1 (2013-05-16) on
x86_64-pc-linux-gnu 64-bit (see sessionInfo() of my initial posting)!

Simone



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