[BioC] BioC 2013, July 17 (Developer Day) 18-19: 'Early' registration deadline July 1

[Martin Morgan]

Bioconductors,

We're looking forward to an exciting conference. The 'early' registration 
deadline is July 1.

   http://bioconductor.org/bioc2013

Be sure to share the attached poster with colleagues!

Morning Scientific Presentations

Olivier Elemento Cancer as a Darwinian process: insights from next-generation 
sequencing • Levi Waldron Meta-analysis for prognostic and predictive gene 
signatures of late-stage ovarian cancer • Fabian Gruber Extensive variation in 
chromatin states across human individuals and populations • Josh Akey Tales of 
human history from 6,500 exome sequences • Kasper Hansen A genome-wide look at 
DNA methylation • New this year, short presentations from the Bioconductor 
community: Gregoire Pau; Laurent Gatto; Rory Stark; Matthew McCall; Tim Triche; 
Alejandro Reyes.

Afternoon Bioconductor Software Workshops (tentative)

R / Bioconductor for everyone • Analysis of RNA-Seq differential gene expression 
and exon use with the DESeq2 and DEXSeq • From reads to genes in less than 10 R 
commands • Efficient manipulation of high-throughput sequence data in 
Bioconductor • A pipeline that parallelizes R scripts improves DNA sequence 
alignment and analysis • ReportingTools: an automated result processing toolkit 
for high throughput genomic analyses • Interactive visualization in Bioconductor 
using Epivizr • Reproducible research using RStudio, knitr and git • Developing 
apps with BaseSpaceR • Variant Calling with Bioconductor  • 
Variant-transcription factor-phenotype networks • Discovering gene regulatory 
mutations • minfi and shinyMethyl: winning packages for methylation analysis • A 
Bioconductor pipeline for ChIP-Seq experiments • Differential analysis of 
ChIP-seq data • Cheminformatics of drug-like small molecule data • Accessing 
public data repositories with Bioconductor  • Annotations in Bioconductor • 
RGalaxy / AnnotationHub


See you in Seattle!

Martin
-- 
Dr. Martin Morgan, PhD
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109


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