[BioC] R error by installing the org.Hs.eg.db package
lisann [guest]
guest at bioconductor.org
Wed Jan 23 16:32:38 CET 2013
I have a question about installing a package in R. It seems to be very simple, but I can't figure out why it goes wrong. I want to install the package: org.Hs.eg.db from bioconductor. All the information about the R version and other package version are below.
I hope that somebody can help me with this!
> source("http://bioconductor.org/biocLite.R")
Bioconductor version 2.11 (BiocInstaller 1.8.3), ?biocLite for help
> biocLite("org.Hs.eg.db")
BioC_mirror: http://bioconductor.org
Using Bioconductor version 2.11 (BiocInstaller 1.8.3), R version 2.15.
Installing package(s) 'org.Hs.eg.db'
trying URL 'http://bioconductor.org/packages/2.11/data/annotation/bin/windows/contrib/2.15/org.Hs.eg.db_2.8.0.zip'
Content type 'application/zip' length 47453600 bytes (45.3 Mb)
opened URL
downloaded 45.3 Mb
The downloaded binary packages are in
C:\Users\lsvijfhuizen\AppData\Local\Temp\RtmpUvyORM\downloaded_packages
Old packages: 'digest'
Update all/some/none? [a/s/n]: a
trying URL 'http://cran.fhcrc.org/bin/windows/contrib/2.15/digest_0.6.1.zip'
Content type 'application/zip' length 135921 bytes (132 Kb)
opened URL
downloaded 132 Kb
package âdigestâ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\lsvijfhuizen\AppData\Local\Temp\RtmpUvyORM\downloaded_packages
Warning message:
In unzip(zipname, exdir = dest) : write error in extracting from zip file
-- output of sessionInfo():
>sessionInfo()
R version 2.15.2 (2012-10-26)
Platform: x86_64-w64-mingw32/x64 (64-bit)
- locale:
LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 LC_NUMERIC=C LC_TIME=English_United States.1252
- attached base packages:
stats graphics grDevices utils datasets methods base
- other attached packages:
BiocInstaller_1.8.3 globaltest_5.12.0 biomaRt_2.14.0 edgeR_3.0.8 limma_3.14.4
- loaded via a namespace (and not attached):
annotate_1.36.0 AnnotationDbi_1.20.3 Biobase_2.18.0
BiocGenerics_0.4.0 DBI_0.2-5 IRanges_1.16.4
parallel_2.15.2 RCurl_1.95-3 RSQLite_0.11.2
splines_2.15.2 stats4_2.15.2 survival_2.37-2
tools_2.15.2 XML_3.95-0.1 xtable_1.7-0
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