[BioC] cytoscapePlot() from graphite package

[Paul Shannon]

Hi John,

This usually means that Cytoscape is not running, or that the CytoscapeRPC plugin is not enabled, or not enabled on the correct port. 

Let us know if you still have trouble after these things are set up.

 - Paul



On Jan 21, 2013, at 2:58 PM, array chip wrote:

> Hi, I was trying to use cytoscapePlot() from the graphite package, but got the error message below:
> 
>> library(graphite)
>> cytoscapePlot(convertIdentifiers(reactome$`Unwinding of DNA`, "symbol"))
> Loading required package: RCytoscape
> Loading required package: XMLRPC
> Error in function (type, msg, asError = TRUE)  : couldn't connect to host
> In addition: Warning messages:
> 1: package ‘RCytoscape’ was built under R version 2.15.2 
> 2: package ‘XMLRPC’ was built under R version 2.15.2
> 
> 
> What's the problem here?
> 
> thanks!
> 
> John
> 	[[alternative HTML version deleted]]
> 
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