[BioC] ChIPpeakAnno question--peak aggregation over bins from TSS

[Zhu, Lihua (Julie)]

Kamesh,

Thanks for sharing the interesting idea! Currently ChIPpeakAnno does not
have function to do that. If there is a need, we are happy to add such
functionality.

Best regards,

Julie


On 1/16/13 8:49 PM, "kamesh" <kamesh.narasimhan at utoronto.ca> wrote:

> Hi ,
> 
> I am new to using ChIPpeakAnno and find it to be a very useful tool for
> ChIP-seq
> data processing. One question I have is, given an annotated data of TSS sites,
> would it be possible using ChIPpeakAnno to aggregate and obtain mean/median of
> signals (for eg: ChIP-TF signal)in bins around the TSS comparable to the ACT
> tool referenced here (http://info.gersteinlab.org/ACT_IntegratedExample).
> 
> Thanks
> 
> kamesh
> university of Toronto
> 
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