[BioC] paper - download - pubmed

[James W. MacDonald]

Hi Nooshin,

NCBI2R is a CRAN package, not BioC. You should either contact the 
maintainer directly, or ask on R-help.

Best,

Jim



On 1/15/2013 6:44 AM, Nooshin Omranian wrote:
>
> Hi,
>
> I actually need to download pdfs through R code. The thing which I 
> want to do is that, search for a paper in pubmed, which is possible by 
> using GetPubMed function in the package "NCBI2R’".
>
> GetPubMed(searchterm, file = "", download = TRUE , showurl = FALSE, 
> xldiv =
> ";", hyper = "HYPERLINK", MaxRet = 30000, sme = FALSE, smt = FALSE,
> quiet = TRUE, batchsize=500,descHead=FALSE)
>
> With this function I can not download the pdfs for all hits, although 
> if I go to the pubmed, I can download it.
>
> So, the problem is not that, for each paper I have to download the 
> pdfs (which are available if I go to the pubmed and search directly 
> there) and the corresponding supplementary files.
>
> Could anybody please help me how I can solve this?
>
> Thanks,
> Nooshin
>
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-- 
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099