[BioC] Gene Ontology: Shortest path from root to node
WoA [guest]
guest at bioconductor.org
Mon Jan 14 16:47:38 CET 2013
Given some GO BP terms for a gene I wish to find out, which of the terms has more specific meaning. I wish to find out the length of the shortest path between the BP Root term(GO:0008150) and the given term. Is there any suitable way to do that using any R package?
Like something equivalent to:
my $length = $node->lengthOfShortestPathToRoot;
in Perl's "GO-TermFinder" package.
Thanks in advance
-- output of sessionInfo():
> sessionInfo()
R version 2.13.1 (2011-07-08)
Platform: i386-pc-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
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