[BioC] Pasilla data for "Counting with summarizeOverlaps/GenomicRanges"

[Paul Shannon]

Hi Darwin,

Please give us a little bit more detail on the tutorial you wish to follow.   Is it one of the vignettes that accompany GenomicRanges?

Also, your sessionInfo() may provide indispensable clues allowing us to help out.

Thanks -

 - Paul

On Jan 10, 2013, at 8:33 PM, Darwin Sorento Dichmann wrote:

> Greetings, 
> 
> I wish to follow the tutorial for summarizeOverlaps from GenomicRanges, but the pasilla.bam files ("treated1.bam", "untreated1.bam", "untreated2.bam") are not with in the package and the provided link for download is dead (http://www.embl.de/~reyes/Graveley/bam).
> 
> Anybody know where I can get those data or have a copy? I also tried following the GEO accessions from the original publication, but all I found was GFFs and BEDs, no bams.
> 
> Any help is greatly appreciated.
> 
> Best, 
> Darwin
> ________________________________
> Darwin Sorento Dichmann, M.S., PhD
> University of California, Berkeley
> Harland Lab
> Molecular and Cell Biology
> 571 Life Sciences Addition
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> E-mail: dichmann at berkeley.edu
> 
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> 
> 
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