[BioC] topGO quick start guide error

[Dan Tenenbaum]

On Wed, Jan 9, 2013 at 6:36 PM, Fix Ace <acefix at rocketmail.com> wrote:
>
> Thank you very much for your reply.
>
> Does it mean I will have to run:
>
> bioclite("hgu95av2.db")

Yes.
If that doesn't work, do this first:

source("http://bioconductor.org/biocLite.R")

Dan


>
> I am really new to bioconductor, not quite sure how it runs...
>
>
> ________________________________
>  From: James W. MacDonald <jmacdon at uw.edu>
>
> Cc: "bioconductor at r-project.org" <bioconductor at r-project.org>
> Sent: Wednesday, January 9, 2013 7:58 AM
> Subject: Re: [BioC] topGO quick start guide error
>
>
>
> On 1/8/2013 5:31 PM, Fix Ace wrote:
>> I just installed topGO and tried to run their example:
>>
>> when I typed:Â
>> Â Â Â  affyLib<- paste(annotation(ALL), "db", sep = ".")
>> Â Â Â  affyLib
>> Â Â Â  [1] "hgu95av2.db"
>> Â Â Â Â library(package = affyLib, character.only = TRUE)
>>
>> got error message:
>> Â Â Â  Error in library(package = affyLib, character.only = TRUE) :
>>   there is no package called ‘hgu95av2.db’
>
> That error message tells you what is wrong - you don't have the
> hgu95av2.db package installed.
>
> Best,
>
> Jim
>
>
>>
>>
>> Anybody has idea what is going on here? Thanks:)
>>     [[alternative HTML version deleted]]
>>
>>
>>
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>
> --
> James W. MacDonald, M.S.
> Biostatistician
> University of Washington
> Environmental and Occupational Health Sciences
> 4225 Roosevelt Way NE, # 100
> Seattle WA 98105-6099
>         [[alternative HTML version deleted]]
>
>
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