[BioC] Have troubles with finding Annotations for Bovine and Rhesus\' platforms

[Marc Carlson]

Hi Kaj,

Rhesus and bovine are both supported.  Unfortunately, we can't have chip 
packages pre-made for every single thing in the whole world.  However we 
have provided functionality that will allow you to generate your own 
package (whenever you can't find it already made).  You can read more 
about how to do this here:

http://www.bioconductor.org/packages/2.12/bioc/vignettes/AnnotationForge/inst/doc/SQLForge.pdf

Follow the instructions carefully, and I expect you should be able to 
get the .db packages you need pretty easily.  If there are any issues, 
please reply and I will help you out.

   Marc



On 02/14/2013 08:48 AM, Kaj Chokeshaiusaha [guest] wrote:
> Dear whom it may concern,
>
> I'm working with the platforms as following:
> 1. Agilent-015354 Bovine Oligo Microarray (4x44K)
> 2. Affymetrix GeneChip Rhesus Macaque Genome Array [Rhesus]
> 3. Affymetrix GeneChip Mouse Gene 1.0 ST Array
>
> Since I'm quite pure biologist, I do have no idea how to find appropriate annotations (.db) for these platforms. I need to use them for virtaulArray.
>
> Would you please help me?
>
> Best Regards,
> Kaj
>
>   -- output of sessionInfo():
>
> sessioninfo()
>
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