[BioC] error in "count" for SummarizedExperiment in easyRNASeq

[Nicolas Delhomme]

Hej Malcom!

Sorry, the answer went off-list, it was unrelated to the bai file though. Could you tell me what your error actually was - so that I can reproduce it - and also include your sessionInfo()?

Thanks,

Nico

---------------------------------------------------------------
Nicolas Delhomme

Genome Biology Computational Support

European Molecular Biology Laboratory

Tel: +49 6221 387 8310
Email: nicolas.delhomme at embl.de
Meyerhofstrasse 1 - Postfach 10.2209
69102 Heidelberg, Germany
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On 17 Dec 2013, at 06:00, Malcolm Cook <malcolm.cook at gmail.com> wrote:

> somewhat Old topic:
> http://thread.gmane.org/gmane.science.biology.informatics.conductor/50304
> 
> It was never answered.
> 
> I had this problem to in calling SummarizeOverlaps,GRanges,BamFilesList
> 
> For me, the problem was resolved by indexing the bam files.
> 
> Ooops.
> 
> Francisco, I hope you already got this working....
> 
> `Malcolm
> 
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---------------------------------------------------------------
Nicolas Delhomme

Nathaniel Street Lab
Department of Plant Physiology
Umeå Plant Science Center

Tel: +46 90 786 7989
Email: nicolas.delhomme at plantphys.umu.se
SLU - Umeå universitet
Umeå S-901 87 Sweden