[BioC] install geneplotter

[James W. MacDonald]

You shouldn't be using install.packages. Instead use biocLite:

http://www.bioconductor.org/install/

Also, you should upgrade to R-3.0.2.

Best,

Jim



On Tuesday, December 17, 2013 4:18:28 AM, liyue [guest] wrote:
>
> HI,
>
> I try to install geneplotter.
>
> li at li-Lenovo:~$ R CMD INSTALL /home/li/geneplotter_1.40.0.tar.gz
> * installing to library ‘/home/li/R/x86_64-pc-linux-gnu-library/2.15’
> * installing *source* package ‘geneplotter’ ...
> ** R
> ** data
> ** inst
> ** preparing package for lazy loading
> No methods found in "BiocGenerics" for requests: plotMA
> Error in setMethod("plotMA", signature(object = "data.frame"), function(object,  :
>    no existing definition for function ‘plotMA’
> Error : unable to load R code in package ‘geneplotter’
> ERROR: lazy loading failed for package ‘geneplotter’
> * removing ‘/home/li/R/x86_64-pc-linux-gnu-library/2.15/geneplotter’
>
> Any help are appreciated!
>
> Yue
>
>   -- output of sessionInfo():
>
> li at li-Lenovo:~$ R CMD INSTALL /home/li/geneplotter_1.40.0.tar.gz
> * installing to library ‘/home/li/R/x86_64-pc-linux-gnu-library/2.15’
> * installing *source* package ‘geneplotter’ ...
> ** R
> ** data
> ** inst
> ** preparing package for lazy loading
> No methods found in "BiocGenerics" for requests: plotMA
> Error in setMethod("plotMA", signature(object = "data.frame"), function(object,  :
>    no existing definition for function ‘plotMA’
> Error : unable to load R code in package ‘geneplotter’
> ERROR: lazy loading failed for package ‘geneplotter’
> * removing ‘/home/li/R/x86_64-pc-linux-gnu-library/2.15/geneplotter’
>
> --
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>
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--
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099