[BioC] edgeR question
Audra [guest]
guest at bioconductor.org
Sun Dec 15 03:51:08 CET 2013
Hi,
I am learning Edge R and am having trouble importing data. I have to tab delimited files, each of two different time points I am trying to look at. How do I input these data into the edgeR program so that I can see the matrix? I hope this question makes sense.
Audra
-- output of sessionInfo():
> sessionInfo
function (package = NULL)
{
z <- list()
z$R.version <- R.Version()
z$platform <- z$R.version$platform
if (nzchar(.Platform$r_arch))
z$platform <- paste(z$platform, .Platform$r_arch, sep = "/")
z$platform <- paste0(z$platform, " (", 8 * .Machine$sizeof.pointer,
"-bit)")
z$locale <- Sys.getlocale()
if (is.null(package)) {
package <- grep("^package:", search(), value = TRUE)
keep <- sapply(package, function(x) x == "package:base" ||
!is.null(attr(as.environment(x), "path")))
package <- sub("^package:", "", package[keep])
}
pkgDesc <- lapply(package, packageDescription, encoding = NA)
if (length(package) == 0)
stop("no valid packages were specified")
basePkgs <- sapply(pkgDesc, function(x) !is.null(x$Priority) &&
x$Priority == "base")
z$basePkgs <- package[basePkgs]
if (any(!basePkgs)) {
z$otherPkgs <- pkgDesc[!basePkgs]
names(z$otherPkgs) <- package[!basePkgs]
}
loadedOnly <- loadedNamespaces()
loadedOnly <- loadedOnly[!(loadedOnly %in% package)]
if (length(loadedOnly)) {
names(loadedOnly) <- loadedOnly
pkgDesc <- c(pkgDesc, lapply(loadedOnly, packageDescription))
z$loadedOnly <- pkgDesc[loadedOnly]
}
class(z) <- "sessionInfo"
z
}
<bytecode: 0x10328e4e0>
<environment: namespace:utils>
>
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