[BioC] Genes, their domains, and a list of superimposed mutations
Gabriele [guest]
guest at bioconductor.org
Thu Aug 29 15:29:22 CEST 2013
Dear Bioconductor mailing list,
I was wondering if anyone knows whether there is any package to plot figures with a given gene, its domains, and symbols from a list of pre-specified mutations, something like what is seen in the cBio portal (http://www.cbioportal.org/public-portal/index.do) when one looks for mutations, or in COSMIC (see this example: http://cancer.sanger.ac.uk/cosmic/gene/analysis?ln=BRAF#histo )... I haven't found anything although I did my research...
Thanks!
-- output of sessionInfo():
R version 3.0.1 (2013-05-16)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=C LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
--
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