[BioC] Change enzyme code (EC) into gene symbol
Marc Carlson
mcarlson at fhcrc.org
Wed Aug 28 04:48:10 CEST 2013
Hi WeiWei,
I don't know what graph you are talking about since you have not
followed the posting guide and given us a working example of what you
are talking about. But you can read it here for future reference:
http://www.bioconductor.org/help/mailing-list/posting-guide/
But now I will guess and try to answer your question anyways. So
assuming that you have EC ids, you can definitely look up the gene
symbols that map to those. For example in human you can do it like this:
## load the organism package for humans
library(org.Hs.eg.db)
## Now lets start by just grabbing some example EC IDs:
h <- head(keys(org.Hs.eg.db, keytype="ENZYME"))
h
## not lets extract the corresponding symbols:
select(org.Hs.eg.db, keys=h, cols="SYMBOL", keytype="ENZYME")
Hope this helps,
Marc
On 08/27/2013 05:36 PM, Nick wrote:
> Hi there,
>
> I am wondering if you can change the ECs for each enzyme on the kegg graph
> like pyrimidine metabolism into gene symbol, for example?
>
> thanks,
>
> Weiwei
>
> [[alternative HTML version deleted]]
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at r-project.org
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
More information about the Bioconductor
mailing list