[BioC] EdgeR: getting CPM values after batch effect correction

[Ryan]

You would have to define batch correction. Are you talking about 
fitting a model of the form "~ experimetalVar + batchEffect" and then 
subtracting out the batch effect coefficient?

On Sun Aug 25 11:11:55 2013, Gilgi Friedlander wrote:
> Dear list,
>
> In edgeR, it possible to get CPM values after batch effect correction (and after TMM normalization)?
>
> Thanks a lot!
>
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