[BioC] error of \"subscript out of bounds\" while applying basicProfile func

d [guest] guest at bioconductor.org
Wed Aug 21 22:52:28 CEST 2013


While applying basicprofiles on 316 entrez IDs in Arabidopsis it is giving error of "subscript out of bounds".

 -- output of sessionInfo(): 

> a<-read.table("tair_ids to gene_ids.csv" ,header=TRUE,sep=",")
 
> b<-as.character(a[,2])

> head(b)

[1] "839235" "838362" "838961" "837091" "837455" "837543"

> h<-basicProfile(b,idType="Entrez",onto ="ANY",level=2,orgPackage="org.At.tair.db",ord=FALSE)

Error in GOtermslist[[i]] : subscript out of bounds

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