[BioC] I need BSgenome for Eucalyptus grandis

[Marc Carlson]

Hi Rodrigo,

Maybe you should have a look at the vignette here?

http://www.bioconductor.org/packages/release/bioc/vignettes/BSgenome/inst/doc/BSgenomeForge.pdf


  Marc





On 08/13/2013 05:23 PM, Rodrigo Hasbun [guest] wrote:
> Hi
>
> I am a young researcher initiating in the use of short sequences generated by NGS for methylation analysis. Currently I am working with MRE-seq in Eucalyptus grandis and I would like to apply MEDIPs for my analysis . The problem is that I have not a BSgenome for this species. It is possible that you generate?
>
> Best
>
> Rodrigo
>
>   -- output of sessionInfo():
>
>> forgeBSgenomeDataPkg("path/to/my/seed")
> Error: no se pudo encontrar la funci'on "forgeBSgenomeDataPkg"
>> library(BSgenome)
> Loading required package: GenomicRanges
> Mensajes de aviso perdidos
> 1: package 'BSgenome' was built under R version 2.12.1
> 2: package 'GenomicRanges' was built under R version 2.12.1
>> forgeBSgenomeDataPkg("path/to/my/seed")
> Error en .readSeedFile(x, verbose = verbose) :
>    seed file 'path/to/my/seed' not found
>> forgeBSgenomeDataPkg(/Volumes/Datos/SeqEuca)
> Error: inesperado '/' en "forgeBSgenomeDataPkg(/"
>> forgeBSgenomeDataPkg(Volumes/Datos/SeqEuca)
> Error en forgeBSgenomeDataPkg(Volumes/Datos/SeqEuca) :
>    error in evaluating the argument 'x' in selecting a method for function 'forgeBSgenomeDataPkg'
>> forgeBSgenomeDataPkg(Volumes/Datos/SeqEuca)
> Error en forgeBSgenomeDataPkg(Volumes/Datos/SeqEuca) :
>    error in evaluating the argument 'x' in selecting a method for function 'forgeBSgenomeDataPkg'
> --
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