[BioC] R package cleanUpdTSeq

[Ou, Jianhong]

Hi Yasin,

I got it. You need go to
http://www.bioconductor.org/packages/devel/bioc/html/cleanUpdTSeq.html to
download the package source and install as local package. Or you install
the develop version R and install it.

If you still have any trouble with that, please let me known.

 
Yours sincerely,

Jianhong Ou

LRB 670A
Program in Gene Function and Expression
364 Plantation Street Worcester,
MA 01605




On 8/4/13 9:32 PM, "Kaymaz, Yasin" <Yasin.Kaymaz at umassmed.edu> wrote:

>Hi Jianhong,
>
>I tried that one as well. Did not work. I also tried to install manually
>but got the same result. I do not know what is wrong.
>
>install.packages("/home/kaymazy/Downloads/cleanUpdTSeq")
>Warning message:
>package Œ/home/kaymazy/Downloads/cleanUpdTSeq¹ is not available (for R
>version 2.15.3)
>
>Yasin
>
>On 08/04/2013 08:34 PM, Ou, Jianhong wrote:
>> Hi Yasin,
>>
>> Did you tried 
>>
>> biocLite("cleanUpdTSeq", type="source")
>>
>> Best!
>>
>> Your sincerely,
>>
>> Jianhong Ou
>>
>> On Aug 4, 2013, at 7:59 PM, Yasin Kaymaz <yasin.kaymaz at umassmed.edu>
>>wrote:
>>
>>> Dear Sarah,
>>>
>>> I would like to install and use your package, however; it keeps
>>>telling me that the package is not available regardless of R version. I
>>>tried to install it on R-2.14, R-2.15 and R-3.1 as well. Non of them
>>>worked.
>>>
>>> I would be happy if you suggest a solution to this.
>>>
>>> Thanks,
>>> Yasin
>>>
>>>
>>> source("http://bioconductor.org/biocLite.R")
>>> Your Bioconductor is out-of-date, upgrade to version 2.12 by following
>>> instructions at http://bioconductor.org/install.
>>> Bioconductor version 2.11 (BiocInstaller 1.8.3), ?biocLite for help
>>>> biocLite("cleanUpdTSeq")
>>> BioC_mirror: http://bioconductor.org
>>> Using Bioconductor version 2.11 (BiocInstaller 1.8.3), R version 2.15.
>>> Installing package(s) 'cleanUpdTSeq'
>>> Warning message:
>>> package ŒcleanUpdTSeq¹ is not available (for R version 2.15.3)
>>>
>>> -- 
>>> Yasin Kaymaz
>>> PhD Student
>>> Bioinformatics & Integrative Biology
>>> Graduate School of Biomedical Sciences
>>> University of Massachusetts Medical School
>>>
>
>-- 
>Yasin Kaymaz
>PhD Student
>Bioinformatics & Integrative Biology
>Graduate School of Biomedical Sciences
>University of Massachusetts Medical School
>