[BioC] fRMA package

[Dan Tenenbaum]

On Tue, Aug 6, 2013 at 3:56 PM, Li Liu <liliu_1 at hotmail.com> wrote:
> Hi Dan,
>
> Thank you for the information. I tried to install the package in another
> computer with windows 7 but it still doesn't work. Is there any other idea?
>

Can you send the exact commands you tried and R's response? Also the
output of sessionInfo().

Thanks,
Dan


> Thanks.
>
> Li
>
>> Date: Tue, 6 Aug 2013 11:36:53 -0700
>> Subject: Re: [BioC] fRMA package
>> From: dtenenba at fhcrc.org
>> To: liliu_1 at hotmail.com
>> CC: bioconductor at r-project.org; rafa at jhu.edu
>>
>> On Tue, Aug 6, 2013 at 10:52 AM, Li Liu <liliu_1 at hotmail.com> wrote:
>> > Hi,
>> >
>> > I want to use the rRMA package in the Bioconductor. I can install the
>> > package successfully but when I run the library there is and error. Is there
>> > anybody who can help? Thanks.
>> >
>> > Li
>> >
>> >
>> >> biocLite("frma")
>> > BioC_mirror: http://bioconductor.org
>> > Using Bioconductor version 2.12 (BiocInstaller 1.10.3), R version 3.0.1.
>> > Installing package(s) 'frma'
>> > trying URL
>> > 'http://bioconductor.org/packages/2.12/bioc/bin/windows/contrib/3.0/frma_1.12.0.zip'
>> > Content type 'application/zip' length 262021 bytes (255 Kb)
>> > opened URL
>> > downloaded 255 Kb
>> >
>> > package ‘frma’ successfully unpacked and MD5 sums checked
>> >
>> > The downloaded binary packages are in
>> > C:\Documents and Settings\li\Local
>> > Settings\Temp\RtmpYpJMpj\downloaded_packages
>> >
>> >> library(frma)
>> > Error in inDL(x, as.logical(local), as.logical(now), ...) :
>> > unable to load shared object 'C:/Program
>> > Files/R/R-3.0.1/library/affxparser/libs/i386/affxparser.dll':
>> > LoadLibrary failure: The specified procedure could not be found.
>> >
>> > Error: package or namespace load failed for ‘frma’
>> >
>>
>> Are you on windows XP? If I recall correctly, the problem is that
>> affxparser does not always work on Windows XP. More information here:
>>
>> https://stat.ethz.ch/pipermail/bioconductor/2013-March/051760.html
>>
>> Dan
>>
>>
>> >> sessionInfo()
>> > R version 3.0.1 (2013-05-16)
>> > Platform: i386-w64-mingw32/i386 (32-bit)
>> >
>> > locale:
>> > [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United
>> > States.1252
>> > [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
>> > [5] LC_TIME=English_United States.1252
>> >
>> > attached base packages:
>> > [1] parallel stats graphics grDevices utils datasets methods base
>> >
>> > other attached packages:
>> > [1] BiocInstaller_1.10.3 affy_1.38.1 Biobase_2.20.1 BiocGenerics_0.6.0
>> >
>> > loaded via a namespace (and not attached):
>> > [1] affyio_1.28.0 MASS_7.3-28 preprocessCore_1.22.0
>> > [4] tools_3.0.1 zlibbioc_1.6.0
>> >
>> >
>> > [[alternative HTML version deleted]]
>> >
>> >
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