[BioC] fRMA package

[Dan Tenenbaum]

On Tue, Aug 6, 2013 at 10:52 AM, Li Liu <liliu_1 at hotmail.com> wrote:
> Hi,
>
> I want to use the rRMA package in the Bioconductor. I can install the package successfully but when I run the library there is and error. Is there anybody who can help? Thanks.
>
> Li
>
>
>> biocLite("frma")
> BioC_mirror: http://bioconductor.org
> Using Bioconductor version 2.12 (BiocInstaller 1.10.3), R version 3.0.1.
> Installing package(s) 'frma'
> trying URL 'http://bioconductor.org/packages/2.12/bioc/bin/windows/contrib/3.0/frma_1.12.0.zip'
> Content type 'application/zip' length 262021 bytes (255 Kb)
> opened URL
> downloaded 255 Kb
>
> package ‘frma’ successfully unpacked and MD5 sums checked
>
> The downloaded binary packages are in
>         C:\Documents and Settings\li\Local Settings\Temp\RtmpYpJMpj\downloaded_packages
>
>> library(frma)
> Error in inDL(x, as.logical(local), as.logical(now), ...) :
>   unable to load shared object 'C:/Program Files/R/R-3.0.1/library/affxparser/libs/i386/affxparser.dll':
>   LoadLibrary failure:  The specified procedure could not be found.
>
> Error: package or namespace load failed for ‘frma’
>

Are you on windows XP? If I recall correctly, the problem is that
affxparser does not always work on Windows XP. More information here:

https://stat.ethz.ch/pipermail/bioconductor/2013-March/051760.html

Dan


>> sessionInfo()
> R version 3.0.1 (2013-05-16)
> Platform: i386-w64-mingw32/i386 (32-bit)
>
> locale:
> [1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252
> [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
> [5] LC_TIME=English_United States.1252
>
> attached base packages:
> [1] parallel  stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] BiocInstaller_1.10.3 affy_1.38.1          Biobase_2.20.1       BiocGenerics_0.6.0
>
> loaded via a namespace (and not attached):
> [1] affyio_1.28.0         MASS_7.3-28           preprocessCore_1.22.0
> [4] tools_3.0.1           zlibbioc_1.6.0
>
>
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>
>
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