[BioC] problem installing GenomicFeatures
Kavita Garg [guest]
guest at bioconductor.org
Mon Apr 29 18:23:49 CEST 2013
I am having trouble updating GenomicFeatures package. Can you please look at it and let me know what I doing wrong.
this is the error I get
Error : object âfindSpliceOverlapsâ is not exported by 'namespace:GenomicRanges'
ERROR: lazy loading failed for package âGenomicFeaturesâ
thanks
kavita
> biocLite("GenomicFeatures")
BioC_mirror: http://bioconductor.org
Using R version 2.15, BiocInstaller version 1.4.9.
Installing package(s) 'GenomicFeatures'
trying URL 'http://bioconductor.org/packages/2.10/bioc/src/contrib/GenomicFeatures_1.8.3.tar.gz'
Content type 'application/x-gzip' length 1749597 bytes (1.7 Mb)
opened URL
==================================================
downloaded 1.7 Mb
* installing *source* package âGenomicFeaturesâ ...
** R
** inst
** preparing package for lazy loading
Error : object âfindSpliceOverlapsâ is not exported by 'namespace:GenomicRanges'
ERROR: lazy loading failed for package âGenomicFeaturesâ
-- output of sessionInfo():
R version 2.15.3 (2013-03-01)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=C LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] BiocInstaller_1.4.9 lattice_0.20-13 Biostrings_2.26.3
[4] AnnotationDbi_1.20.6 Biobase_2.18.0 GenomicRanges_1.8.13
[7] IRanges_1.16.6 BiocGenerics_0.4.0
loaded via a namespace (and not attached):
[1] biomaRt_2.14.0 bitops_1.0-5 BSgenome_1.26.1 DBI_0.2-5
[5] grid_2.15.3 parallel_2.15.3 RCurl_1.95-4.1 RSQLite_0.11.2
[9] stats4_2.15.3 tools_2.15.3 XML_3.95-0.2 zlibbioc_1.4.0
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