[BioC] Add new affy organism platform

[cstrato]

Dear Ekta,

In principle you can use package 'xps'.

For the creation of the scheme files containing the Affymetrix Rice 
library and annotation files you do:

### new R session: load library xps
library(xps)

# directory containing Affymetrix library and probe files
libdir <- "/Volumes/GigaDrive/Affy/libraryfiles"

# directory containing Affymetrix annotation files
anndir <- "/Volumes/GigaDrive/Affy/Annotation"

# directory to store ROOT scheme files
scmdir <- "/Volumes/GigaDrive/CRAN/Workspaces/Schemes"

# Rice:
scheme.rice.na33 <- import.expr.scheme("rice", filedir = 
file.path(scmdir, "na33"),
   schemefile = file.path(libdir, "Rice.cdf"),
   probefile  = file.path(libdir, "Rice.probe.tab"),
   annotfile  = file.path(anndir, "Version12Nov", "Rice.na33.annot.csv"))

Best regards,
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n   S.t.r.a.t.o.w.a
V.i.e.n.n.a           A.u.s.t.r.i.a
e.m.a.i.l:        cstrato at aon.at
_._._._._._._._._._._._._._._._._._



On 4/28/13 3:49 PM, Ekta Jain wrote:
>
>     Dear All,
>
>     The affy platform annotation packages available in bioconductor do not have
>     "rice" included. Is there a way i can still use this in R?
>
>     Any suggestions would be highly appreciated.
>
>     Thank you
>
>     Ekta Jain
>
>     Research Analyst
>     Biotechnology and Bio-resources Division
>     The Energy and Resources Institute, India Habitat Centre
>     Lodhi Road, New Delhi - 110033
>     #09958818853
>     [1]ekta.jain at teri.res.in
>
>
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