[BioC] IdeogramTrack and bigWig file errors in Gviz
Dan Tenenbaum
dtenenba at fhcrc.org
Sat Apr 27 19:14:14 CEST 2013
On Sat, Apr 27, 2013 at 10:05 AM, Dan Tenenbaum <dtenenba at fhcrc.org> wrote:
> On Sat, Apr 27, 2013 at 8:51 AM, Miles Pufall <miles.pufall at gmail.com> wrote:
>> Oops - and here's my sessionInfo:
>>
>>
>>> sessionInfo()
>> R Under development (unstable) (2013-04-26 r62678)
>
> Not sure if this is your problem or not, but both the release (2.12)
> and devel (2.13) versions of Bioconductor are meant to work with R
> 3.0.x, not R-devel.
>
It appears that there was not a Mac binary of Gviz until today. There
is now and I was just able to
biocLite("Gviz")
on a Mac and Gviz was successfully installed.
> I am trying to install Gviz using biocLite in R devel and it says it's only available as a source package. I'm a little new at this...how would I install the latest version from source within R?
biocLite("Gviz", type="source")
This requires that you have Xcode, the Xcode command-line tools, and
MacTeX installed.
Dan
> Dan
>
>
>
>> Platform: x86_64-apple-darwin10.8.0 (64-bit)
>>
>> locale:
>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>>
>> attached base packages:
>> [1] stats graphics grDevices utils datasets methods base
>>
>> other attached packages:
>> [1] BiocInstaller_1.11.0
>>
>> loaded via a namespace (and not attached):
>> [1] tools_3.1.0
>>
>> M
>>
>> On Apr 27, 2013, at 10:08 AM, "Pufall, Miles A" <miles-pufall at uiowa.edu> wrote:
>>
>>> I am trying to install Gviz using biocLite in R devel and it says it's only available as a source package. I'm a little new at this...how would I install the latest version from source within R?
>>>
>>> Thx -
>>>
>>> Miles
>>>
>>> Miles Pufall, PhD
>>> Assistant Professor, Department of Biochemistry
>>> University of Iowa
>>> 51 Newton Rd., BSB 4-430
>>> Iowa City, IA 52242
>>> Office: 319-384-1820
>>> Email: miles-pufall at uiowa.edu<mailto:miles-pufall at uiowa.edu>
>>>
>>>
>>> On Apr 26, 2013, at 8:00 AM, Robert Ivanek <robert.ivanek at unibas.ch<mailto:robert.ivanek at unibas.ch>> wrote:
>>>
>>> Dear Dweebis,
>>>
>>> Thanks for reporting this issue. The first one is fixed, there was a bug
>>> in "chromosome<-" method . Fixed versions 1.4.1 (2.12 branch) and 1.5.1
>>> (devel) should be available in 24 hours.
>>>
>>> Regarding the crash with BigWig file, would you mind to share it?
>>>
>>> Best
>>> Robert
>>>
>>> On 26 Apr 2013, at 06:49, "Dweebis [guest]" <guest at bioconductor.org<mailto:guest at bioconductor.org>> wrote:
>>>
>>>
>>> I'm trying to use Gviz to make figures displaying some ChIPseq data. I'd converted it to bigWig files to display in a genome browser and to store more easily. When I use Gviz on a Linux workstation, it seems to go smoothly, but when I use my MacBook Pro I have a few problems. The first is running some code from the vignette, which gives me the following error:
>>> library(Gviz)
>>> Loading required package: grid
>>> ideoTrack <- IdeogramTrack(genome = "hg19", chromosome = "chrX")
>>> plotTracks(ideoTrack, from = 85000000, to = 129000000)
>>> Error in .normargSeqnames(seqnames) :
>>> supplied 'seqnames' cannot contain NAs or empty strings ("")
>>>
>>> The second is when I try to plot from my bigWig files:
>>> library("Gviz")
>>> Loading required package: grid
>>> library(GenomicRanges)
>>> Loading required package: BiocGenerics
>>> Loading required package: parallel
>>>
>>> Attaching package: â?~BiocGenericsâ?T
>>>
>>> The following objects are masked from â?~package:parallelâ?T:
>>>
>>> clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport,
>>> clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply,
>>> parSapplyLB
>>>
>>> The following object is masked from â?~package:statsâ?T:
>>>
>>> xtabs
>>>
>>> The following objects are masked from â?~package:baseâ?T:
>>>
>>> anyDuplicated, as.data.frame, cbind, colnames, duplicated, eval, Filter, Find,
>>> get, intersect, lapply, Map, mapply, match, mget, order, paste, pmax, pmax.int,
>>> pmin, pmin.int, Position, rank, rbind, Reduce, rep.int, rownames, sapply,
>>> setdiff, sort, table, tapply, union, unique, unlist
>>>
>>> Loading required package: IRanges
>>> setwd("~/Desktop/B1_ChIPseq")
>>> gtrack <- GenomeAxisTrack()
>>> b1_dex <- DataTrack("/Volumes/puf_3/Nalm6/nalm6_dex_n499.bw", strand="+",genome ="hg19");
>>> names(b1_dex)<-"Fkbp5";
>>> plotTracks(list(gtrack, b1_dex), from = 35540000, to = 35698000, type="histogram", chromosome="chr6")
>>>
>>> This crashes R completely with an exit message: Abort trap: 6
>>>
>>> There is an associated OSX crash report, which I've pasted below.
>>>
>>> Any ideas what's going wrong?
>>>
>>> Thx -
>>>
>>> D
>>>
>>> Process: R [26469]
>>> Path: /Library/Frameworks/R.framework/Resources/bin/exec/R
>>> Identifier: R
>>> Version: ???
>>> Code Type: X86-64 (Native)
>>> Parent Process: bash [26264]
>>> User ID: 501
>>>
>>> Date/Time: 2013-04-25 23:24:05.617 -0500
>>> OS Version: Mac OS X 10.8.3 (12D78)
>>> Report Version: 10
>>>
>>> Interval Since Last Report: 2714 sec
>>> Crashes Since Last Report: 7
>>> Per-App Crashes Since Last Report: 1
>>> Anonymous UUID: 0FFEC26B-8E19-7735-0F96-8B3430A59ECE
>>>
>>> Crashed Thread: 0 Dispatch queue: com.apple.main-thread
>>>
>>> Exception Type: EXC_CRASH (SIGABRT)
>>> Exception Codes: 0x0000000000000000, 0x0000000000000000
>>>
>>> Application Specific Information:
>>> [26469] stack overflow
>>>
>>> Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
>>> 0 libsystem_kernel.dylib 0x00007fff8a832212 __pthread_kill + 10
>>> 1 libsystem_c.dylib 0x00007fff926f0b54 pthread_kill + 90
>>> 2 libsystem_c.dylib 0x00007fff92734e9e __abort + 159
>>> 3 libsystem_c.dylib 0x00007fff92735d17 __stack_chk_fail + 195
>>> 4 rtracklayer.so 0x0000000107427d24 bptFileFind + 212
>>> 5 rtracklayer.so 0x0000000107429104 bbiOverlappingBlocks + 68
>>> 6 rtracklayer.so 0x000000010742cb00 bigWigIntervalQuery + 128
>>> 7 rtracklayer.so 0x0000000107425bc0 BWGFile_query + 448
>>> 8 libR.dylib 0x0000000100071033 do_dotcall + 547 (dotcode.c:585)
>>> 9 libR.dylib 0x0000000100099d67 Rf_eval + 1335 (eval.c:612)
>>> 10 libR.dylib 0x00000001000a7771 do_set + 369 (eval.c:1863)
>>> 11 libR.dylib 0x0000000100099bd6 Rf_eval + 934 (eval.c:584)
>>> 12 libR.dylib 0x00000001000a7ad0 do_begin + 384 (eval.c:1534)
>>> 13 libR.dylib 0x0000000100099bd6 Rf_eval + 934 (eval.c:584)
>>> 14 libR.dylib 0x00000001000a529e Rf_applyClosure + 1390 (eval.c:980)
>>> 15 libR.dylib 0x0000000100099e05 Rf_eval + 1493 (eval.c:631)
>>> 16 libR.dylib 0x00000001000a7ad0 do_begin + 384 (eval.c:1534)
>>> 17 libR.dylib 0x0000000100099bd6 Rf_eval + 934 (eval.c:584)
>>> 18 libR.dylib 0x00000001000a86a2 R_execMethod + 1410 (eval.c:1076)
>>> 19 methods.so 0x00000001005eb474 R_dispatchGeneric + 1972
>>> 20 libR.dylib 0x00000001000d6235 do_standardGeneric + 565 (objects.c:1142)
>>> 21 libR.dylib 0x0000000100099da3 Rf_eval + 1395 (eval.c:616)
>>> 22 libR.dylib 0x00000001000a529e Rf_applyClosure + 1390 (eval.c:980)
>>> 23 libR.dylib 0x0000000100099e05 Rf_eval + 1493 (eval.c:631)
>>> 24 libR.dylib 0x00000001000a7ad0 do_begin + 384 (eval.c:1534)
>>> 25 libR.dylib 0x0000000100099bd6 Rf_eval + 934 (eval.c:584)
>>> 26 libR.dylib 0x00000001000a86a2 R_execMethod + 1410 (eval.c:1076)
>>> 27 methods.so 0x00000001005eb474 R_dispatchGeneric + 1972
>>> 28 libR.dylib 0x00000001000d6235 do_standardGeneric + 565 (objects.c:1142)
>>> 29 libR.dylib 0x0000000100099da3 Rf_eval + 1395 (eval.c:616)
>>> 30 libR.dylib 0x00000001000a529e Rf_applyClosure + 1390 (eval.c:980)
>>> 31 libR.dylib 0x0000000100099e05 Rf_eval + 1493 (eval.c:631)
>>> 32 libR.dylib 0x00000001000a7ad0 do_begin + 384 (eval.c:1534)
>>> 33 libR.dylib 0x0000000100099bd6 Rf_eval + 934 (eval.c:584)
>>> 34 libR.dylib 0x0000000100099bd6 Rf_eval + 934 (eval.c:584)
>>> 35 libR.dylib 0x00000001000a7771 do_set + 369 (eval.c:1863)
>>> 36 libR.dylib 0x0000000100099bd6 Rf_eval + 934 (eval.c:584)
>>> 37 libR.dylib 0x00000001000a7ad0 do_begin + 384 (eval.c:1534)
>>> 38 libR.dylib 0x0000000100099bd6 Rf_eval + 934 (eval.c:584)
>>> 39 libR.dylib 0x0000000100099bd6 Rf_eval + 934 (eval.c:584)
>>> 40 libR.dylib 0x00000001000a7ad0 do_begin + 384 (eval.c:1534)
>>> 41 libR.dylib 0x0000000100099bd6 Rf_eval + 934 (eval.c:584)
>>> 42 libR.dylib 0x00000001000a529e Rf_applyClosure + 1390 (eval.c:980)
>>> 43 libR.dylib 0x0000000100099e05 Rf_eval + 1493 (eval.c:631)
>>> 44 libR.dylib 0x00000001000a7771 do_set + 369 (eval.c:1863)
>>> 45 libR.dylib 0x0000000100099bd6 Rf_eval + 934 (eval.c:584)
>>> 46 libR.dylib 0x00000001000a7ad0 do_begin + 384 (eval.c:1534)
>>> 47 libR.dylib 0x0000000100099bd6 Rf_eval + 934 (eval.c:584)
>>> 48 libR.dylib 0x0000000100099bd6 Rf_eval + 934 (eval.c:584)
>>> 49 libR.dylib 0x00000001000a7ad0 do_begin + 384 (eval.c:1534)
>>> 50 libR.dylib 0x0000000100099bd6 Rf_eval + 934 (eval.c:584)
>>> 51 libR.dylib 0x00000001000a529e Rf_applyClosure + 1390 (eval.c:980)
>>> 52 libR.dylib 0x0000000100099e05 Rf_eval + 1493 (eval.c:631)
>>> 53 libR.dylib 0x00000001000a7ad0 do_begin + 384 (eval.c:1534)
>>> 54 libR.dylib 0x0000000100099bd6 Rf_eval + 934 (eval.c:584)
>>> 55 libR.dylib 0x00000001000a86a2 R_execMethod + 1410 (eval.c:1076)
>>> 56 methods.so 0x00000001005eb474 R_dispatchGeneric + 1972
>>> 57 libR.dylib 0x00000001000d6235 do_standardGeneric + 565 (objects.c:1142)
>>> 58 libR.dylib 0x0000000100099da3 Rf_eval + 1395 (eval.c:616)
>>> 59 libR.dylib 0x00000001000a529e Rf_applyClosure + 1390 (eval.c:980)
>>> 60 libR.dylib 0x0000000100099e05 Rf_eval + 1493 (eval.c:631)
>>> 61 libR.dylib 0x000000010000eb81 do_lapply + 673 (apply.c:76)
>>> 62 libR.dylib 0x00000001000d3c5a do_internal + 362 (names.c:1168)
>>> 63 libR.dylib 0x000000010009cd1f bcEval + 11791 (eval.c:4583)
>>> 64 libR.dylib 0x000000010009994f Rf_eval + 287 (eval.c:515)
>>> 65 libR.dylib 0x00000001000a86a2 R_execMethod + 1410 (eval.c:1076)
>>> 66 methods.so 0x00000001005eb474 R_dispatchGeneric + 1972
>>> 67 libR.dylib 0x00000001000d6235 do_standardGeneric + 565 (objects.c:1142)
>>> 68 libR.dylib 0x0000000100099da3 Rf_eval + 1395 (eval.c:616)
>>> 69 libR.dylib 0x00000001000a529e Rf_applyClosure + 1390 (eval.c:980)
>>> 70 libR.dylib 0x0000000100099e05 Rf_eval + 1493 (eval.c:631)
>>> 71 libR.dylib 0x00000001000a7771 do_set + 369 (eval.c:1863)
>>> 72 libR.dylib 0x0000000100099bd6 Rf_eval + 934 (eval.c:584)
>>> 73 libR.dylib 0x00000001000a7ad0 do_begin + 384 (eval.c:1534)
>>> 74 libR.dylib 0x0000000100099bd6 Rf_eval + 934 (eval.c:584)
>>> 75 libR.dylib 0x0000000100099bd6 Rf_eval + 934 (eval.c:584)
>>> 76 libR.dylib 0x00000001000a7ad0 do_begin + 384 (eval.c:1534)
>>> 77 libR.dylib 0x0000000100099bd6 Rf_eval + 934 (eval.c:584)
>>> 78 libR.dylib 0x00000001000a529e Rf_applyClosure + 1390 (eval.c:980)
>>> 79 libR.dylib 0x0000000100099e05 Rf_eval + 1493 (eval.c:631)
>>> 80 libR.dylib 0x00000001000c97df Rf_ReplIteration + 879 (main.c:258)
>>> 81 libR.dylib 0x00000001000c9e63 run_Rmainloop + 211 (main.c:307)
>>> 82 R 0x0000000100000e5b main + 27
>>> 83 R 0x0000000100000e34 start + 52
>>>
>>> Thread 1:: Dispatch queue: com.apple.libdispatch-manager
>>> 0 libsystem_kernel.dylib 0x00007fff8a832d16 kevent + 10
>>> 1 libdispatch.dylib 0x00007fff8affddea _dispatch_mgr_invoke + 883
>>> 2 libdispatch.dylib 0x00007fff8affd9ee _dispatch_mgr_thread + 54
>>>
>>> Thread 2:
>>> 0 libsystem_kernel.dylib 0x00007fff8a832322 __select + 10
>>> 1 grDevices.so 0x0000000102ea8440 -[ELThread eventsThread:] + 176
>>> 2 com.apple.Foundation 0x00007fff8f55ecd2 __NSThread__main__ + 1345
>>> 3 libsystem_c.dylib 0x00007fff926ef7a2 _pthread_start + 327
>>> 4 libsystem_c.dylib 0x00007fff926dc1e1 thread_start + 13
>>>
>>> Thread 0 crashed with X86 Thread State (64-bit):
>>> rax: 0x0000000000000000 rbx: 0x0000000000000006 rcx: 0x00007fff5fbf83f8 rdx: 0x0000000000000000
>>> rdi: 0x0000000000000f07 rsi: 0x0000000000000006 rbp: 0x00007fff5fbf8420 rsp: 0x00007fff5fbf83f8
>>> r8: 0x00007fff7abed278 r9: 0x0000000000000000 r10: 0x0000000020000000 r11: 0x0000000000000206
>>> r12: 0x00007fff5fbf84f0 r13: 0x0000000000000004 r14: 0x00007fff7abee180 r15: 0x0000000107293010
>>> rip: 0x00007fff8a832212 rfl: 0x0000000000000206 cr2: 0x00007fff7abe6ff0
>>> Logical CPU: 0
>>>
>>> Binary Images:
>>> 0x100000000 - 0x100000ff7 +R (???) <D62F3923-33A9-31E3-8256-72609AFF38DF> /Library/Frameworks/R.framework/Resources/bin/exec/R
>>> 0x100003000 - 0x10026efff +libR.dylib (3) <2FA3EDB5-B755-3972-AFBA-337B24212428> /Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libR.dylib
>>> 0x10038c000 - 0x1003b5ff7 +libRblas.dylib (0) <869671F9-C174-39EA-8496-9E88B343A3B0> /Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libRblas.dylib
>>> 0x1003ba000 - 0x100470fcf +libgfortran.2.dylib (3) <ACF1816E-EA8A-4DB9-A893-A4EF0CEFFFBA> /Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib
>>> 0x1004b5000 - 0x1004dffd9 +libreadline.5.2.dylib (5.2) /Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib
>>> 0x1005c2000 - 0x1005c9fff +utils.so (0) <8FBF096E-B6CE-398E-A920-01DE1B245C41> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/utils/libs/utils.so
>>> 0x1005e9000 - 0x1005eefff +methods.so (0) <AB37FBDB-4142-3274-AFFB-B2FB7FD32FC7> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/methods/libs/methods.so
>>> 0x1005f7000 - 0x1005f9fef +bitops.so (0) <F9843053-E910-36CF-9DF1-F4121020F969> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/bitops/libs/bitops.so
>>> 0x1007f2000 - 0x1007f5fef +parallel.so (0) <E5A82D0C-98BD-3E65-A7EE-1FAB5C8B6264> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/parallel/libs/parallel.so
>>> 0x1007f9000 - 0x1007fcfff +Biobase.so (0) <68F5403C-3382-31CD-BDAB-4335D037FE5E> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biobase/libs/Biobase.so
>>> 0x101194000 - 0x1011cffef +graphics.so (0) <9E6394E4-AF37-3F25-A180-026E82583AF2> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/graphics/libs/graphics.so
>>> 0x1011da000 - 0x1011e3fff +RCurl.so (0) <66E5F530-2EF3-32CB-9373-1A6491E8366A> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RCurl/libs/RCurl.so
>>> 0x1011ed000 - 0x1011effff +lattice.so (0) <5A52F152-052E-3C10-B9B3-5B486A910DD7> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/lattice/libs/lattice.so
>>> 0x1011f2000 - 0x1011f3ff7 +plyr.so (0) <EB5CBAA5-F26D-31D4-A292-F9AC0B2A189E> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/plyr/libs/plyr.so
>>> 0x10120f000 - 0x101219fff +GenomicRanges.so (0) <844F62EE-EEF9-3C56-812A-4E75A899CCB2> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/GenomicRanges/libs/GenomicRanges.so
>>> 0x101224000 - 0x101230fff +colorspace.so (0) <0E7C120B-148E-351A-92A1-C7963AC07174> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/colorspace/libs/colorspace.so
>>> 0x10126e000 - 0x10127aff7 +cluster.so (0) <55B40D4D-8432-3FEB-BBB7-8E65C948C17C> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/cluster/libs/cluster.so
>>> 0x10127e000 - 0x10127fff7 +biovizBase.so (0) <45F295A2-1E32-3E5C-96B9-1657114AE545> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/biovizBase/libs/biovizBase.so
>>> 0x101396000 - 0x1013b1fff +grid.so (0) <0A0B45EC-AC1D-3F33-A57E-6B234CC42505> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/grid/libs/grid.so
>>> 0x1013be000 - 0x1013c3fff +Hmisc.so (0) <45B74820-59DF-3402-9F5C-CB4A0A3E90D4> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Hmisc/libs/Hmisc.so
>>> 0x101420000 - 0x101436ff7 +XML.so (0) <E2B500CA-56D9-35B8-ABA5-802C93B67BF3> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/XML/libs/XML.so
>>> 0x1029ae000 - 0x1029befff +tools.so (0) <CEF0DC14-7405-36D1-8696-DA60801DCA44> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/tools/libs/tools.so
>>> 0x102e82000 - 0x102ebffff +grDevices.so (0) <F7087219-A4A6-33C3-A0A8-19AADED62431> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/grDevices/libs/grDevices.so
>>> 0x102edb000 - 0x102f65fef +stats.so (0) <99BD4BBA-AE70-38A3-BC7E-ABEF5775D09A> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/stats/libs/stats.so
>>> 0x103900000 - 0x103a7efff +libRlapack.dylib (3) <C2DD755E-0F94-37F9-85F2-305E6F3720FB> /Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libRlapack.dylib
>>> 0x103e66000 - 0x103e97ff7 +IRanges.so (0) <65E44E38-96BC-3AC5-8490-5EDE934749F4> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/libs/IRanges.so
>>> 0x103f9a000 - 0x103fd5fef +Rsamtools.so (0) <2ECCAE63-A2CE-3097-8AFF-31E11FB22989> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rsamtools/libs/Rsamtools.so
>>> 0x107420000 - 0x107461ff7 +rtracklayer.so (0) <A1B33ECB-4C97-3D25-A0C1-21609054A3CA> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/rtracklayer/libs/rtracklayer.so
>>> 0x108000000 - 0x10802aff7 +Biostrings.so (0) <D2594EC2-693D-3B33-ADE7-6CD903626301> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/libs/Biostrings.so
>>> 0x10f800000 - 0x10f8c8fff +RSQLite.so (0) <E5AFC155-2126-35F7-BB65-9EC27183117A> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RSQLite/libs/RSQLite.so
>>> 0x7fff619d3000 - 0x7fff61a0793f dyld (210.2.3) <A40597AA-5529-3337-8C09-D8A014EB1578> /usr/lib/dyld
>>> 0x7fff8973b000 - 0x7fff8975aff7 libresolv.9.dylib (51) <0882DC2D-A892-31FF-AD8C-0BB518C48B23> /usr/lib/libresolv.9.dylib
>>> 0x7fff8975b000 - 0x7fff897aaff7 libFontRegistry.dylib (100) <2E03D7DA-9B8F-31BB-8FB5-3D3B6272127F> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontRegistry.dylib
>>> 0x7fff89b4c000 - 0x7fff89b59fff com.apple.AppleFSCompression (49 - 1.0) <5508344A-2A7E-3122-9562-6F363910A80E> /System/Library/PrivateFrameworks/AppleFSCompression.framework/Versions/A/AppleFSCompression
>>> 0x7fff89b5a000 - 0x7fff89bb0fff com.apple.HIServices (1.20 - 417) <A1129272-FEC8-350B-BA26-5A97F23C413D> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices
>>> 0x7fff89e2f000 - 0x7fff89e5bff7 libRIP.A.dylib (331.0.4) <4B261CE2-524E-3FA9-9437-B70DAC1EAB95> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Resources/libRIP.A.dylib
>>> 0x7fff89ebc000 - 0x7fff89ec1fff libcompiler_rt.dylib (30) <08F8731D-5961-39F1-AD00-4590321D24A9> /usr/lib/system/libcompiler_rt.dylib
>>> 0x7fff89efd000 - 0x7fff8a083fff libBLAS.dylib (1073.4) <C102C0F6-8CB6-3B49-BA6B-2EB61F0B2784> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
>>> 0x7fff8a09a000 - 0x7fff8a0f1ff7 com.apple.ScalableUserInterface (1.0 - 1) <F1D43DFB-1796-361B-AD4B-39F1EED3BE19> /System/Library/Frameworks/QuartzCore.framework/Versions/A/Frameworks/ScalableUserInterface.framework/Versions/A/ScalableUserInterface
>>> 0x7fff8a373000 - 0x7fff8a3d0ff7 com.apple.audio.CoreAudio (4.1.1 - 4.1.1) <D15F3FB3-BE53-3545-AD37-9A25A597FE3C> /System/Library/Frameworks/CoreAudio.framework/Versions/A/CoreAudio
>>> 0x7fff8a3d1000 - 0x7fff8a43afff libstdc++.6.dylib (56) <EAA2B53E-EADE-39CF-A0EF-FB9D4940672A> /usr/lib/libstdc++.6.dylib
>>> 0x7fff8a43b000 - 0x7fff8a63bfff libicucore.A.dylib (491.11.2) <FD6282D8-DF3F-3842-8C2E-CF478D2B9669> /usr/lib/libicucore.A.dylib
>>> 0x7fff8a63c000 - 0x7fff8a755fff com.apple.ImageIO.framework (3.2.0 - 849) <C52AED41-A7C2-300B-91FA-5AF73718D243> /System/Library/Frameworks/ImageIO.framework/Versions/A/ImageIO
>>> 0x7fff8a789000 - 0x7fff8a798fff com.apple.opengl (1.8.7 - 1.8.7) <26F7FF79-6BB2-3968-B70D-71D4E07C9551> /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
>>> 0x7fff8a799000 - 0x7fff8a7c3ff7 com.apple.CoreVideo (1.8 - 99.4) <E5082966-6D81-3973-A05A-38AA5B85F886> /System/Library/Frameworks/CoreVideo.framework/Versions/A/CoreVideo
>>> 0x7fff8a820000 - 0x7fff8a83bff7 libsystem_kernel.dylib (2050.22.13) <5A961E2A-CFB8-362B-BC43-122704AEB047> /usr/lib/system/libsystem_kernel.dylib
>>> 0x7fff8a977000 - 0x7fff8a981fff com.apple.speech.recognition.framework (4.1.5 - 4.1.5) <D803919C-3102-3515-A178-61E9C86C46A1> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition
>>> 0x7fff8a991000 - 0x7fff8a9e0ff7 libcorecrypto.dylib (106.2) <CE0C29A3-C420-339B-ADAA-52F4683233CC> /usr/lib/system/libcorecrypto.dylib
>>> 0x7fff8a9ed000 - 0x7fff8aa04fff libGL.dylib (8.7.25) <15F5CB64-847B-3D3D-9663-E0523F15F513> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
>>> 0x7fff8aa16000 - 0x7fff8aa18fff com.apple.TrustEvaluationAgent (2.0 - 23) <A97D348B-32BF-3E52-8DF2-59BFAD21E1A3> /System/Library/PrivateFrameworks/TrustEvaluationAgent.framework/Versions/A/TrustEvaluationAgent
>>> 0x7fff8aa1d000 - 0x7fff8aa2bfff com.apple.Librarian (1.1 - 1) <5AC28666-7642-395F-A923-C6F8A274BBBD> /System/Library/PrivateFrameworks/Librarian.framework/Versions/A/Librarian
>>> 0x7fff8aa2c000 - 0x7fff8aa2dff7 libSystem.B.dylib (169.3) <365477AB-D641-389D-B8F4-A1FAE9657EEE> /usr/lib/libSystem.B.dylib
>>> 0x7fff8aa2e000 - 0x7fff8aa50ff7 libxpc.dylib (140.42) <BBE558BD-5E55-35E4-89ED-1AA6B056D05A> /usr/lib/system/libxpc.dylib
>>> 0x7fff8aa51000 - 0x7fff8ab02fff com.apple.LaunchServices (539.7 - 539.7) <DA7C602E-5E01-31B8-925D-B45360CA089F> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices
>>> 0x7fff8ab03000 - 0x7fff8ab0afff com.apple.NetFS (5.0 - 4.0) <82E24B9A-7742-3DA3-9E99-ED267D98C05E> /System/Library/Frameworks/NetFS.framework/Versions/A/NetFS
>>> 0x7fff8ab22000 - 0x7fff8ab34ff7 libz.1.dylib (43) <2A1551E8-A272-3DE5-B692-955974FE1416> /usr/lib/libz.1.dylib
>>> 0x7fff8ab35000 - 0x7fff8ab3bfff libmacho.dylib (829) <BF332AD9-E89F-387E-92A4-6E1AB74BD4D9> /usr/lib/system/libmacho.dylib
>>> 0x7fff8ab3c000 - 0x7fff8ab3cfff libOpenScriptingUtil.dylib (148.3) <F8681222-0969-3B10-8BCE-C55A4B9C520C> /usr/lib/libOpenScriptingUtil.dylib
>>> 0x7fff8ade0000 - 0x7fff8ae11ff7 com.apple.DictionaryServices (1.2 - 184.4) <054F2D6F-9CFF-3EF1-9778-25C551B616C1> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/DictionaryServices.framework/Versions/A/DictionaryServices
>>> 0x7fff8ae12000 - 0x7fff8af0ffff libsqlite3.dylib (138.1) <ADE9CB98-D77D-300C-A32A-556B7440769F> /usr/lib/libsqlite3.dylib
>>> 0x7fff8af10000 - 0x7fff8afcdff7 com.apple.ColorSync (4.8.0 - 4.8.0) <6CE333AE-EDDB-3768-9598-9DB38041DC55> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ColorSync.framework/Versions/A/ColorSync
>>> 0x7fff8aff7000 - 0x7fff8aff8fff libsystem_blocks.dylib (59) <D92DCBC3-541C-37BD-AADE-ACC75A0C59C8> /usr/lib/system/libsystem_blocks.dylib
>>> 0x7fff8aff9000 - 0x7fff8b00eff7 libdispatch.dylib (228.23) <D26996BF-FC57-39EB-8829-F63585561E09> /usr/lib/system/libdispatch.dylib
>>> 0x7fff8b00f000 - 0x7fff8b016fff libGFXShared.dylib (8.7.25) <869580B2-39CB-30C3-B76E-73BB4894B6B7> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
>>> 0x7fff8b0d9000 - 0x7fff8b22afff com.apple.audio.toolbox.AudioToolbox (1.8 - 1.8) <C680EE1A-B4ED-3E77-A08C-DC47922ACA33> /System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox
>>> 0x7fff8b729000 - 0x7fff8b748ff7 com.apple.ChunkingLibrary (2.0 - 133.3) <8BEC9AFB-DCAA-37E8-A5AB-24422B234ECF> /System/Library/PrivateFrameworks/ChunkingLibrary.framework/Versions/A/ChunkingLibrary
>>> 0x7fff8b749000 - 0x7fff8b749fff com.apple.CoreServices (57 - 57) <9DD44CB0-C644-35C3-8F57-0B41B3EC147D> /System/Library/Frameworks/CoreServices.framework/Versions/A/CoreServices
>>> 0x7fff8b7da000 - 0x7fff8b7dcfff libquarantine.dylib (52) <4BE2E642-A14F-340A-B482-5BD2AEFD9C24> /usr/lib/system/libquarantine.dylib
>>> 0x7fff8c093000 - 0x7fff8c19efff libFontParser.dylib (84.6) <96C42E49-79A6-3475-B5E4-6A782599A6DA> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontParser.dylib
>>> 0x7fff8c1e3000 - 0x7fff8c1e7ff7 com.apple.TCC (1.0 - 1) <F2F3B753-FC73-3543-8BBE-859FDBB4D6A6> /System/Library/PrivateFrameworks/TCC.framework/Versions/A/TCC
>>> 0x7fff8c230000 - 0x7fff8c239ff7 com.apple.CommerceCore (1.0 - 26.1) <40A129A8-4E5D-3C7A-B299-8CB203C4C65D> /System/Library/PrivateFrameworks/CommerceKit.framework/Versions/A/Frameworks/CommerceCore.framework/Versions/A/CommerceCore
>>> 0x7fff8c23a000 - 0x7fff8c631fff libLAPACK.dylib (1073.4) <D632EC8B-2BA0-3853-800A-20DA00A1091C> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib
>>> 0x7fff8c652000 - 0x7fff8c661ff7 libxar.1.dylib (105) <370ED355-E516-311E-BAFD-D80633A84BE1> /usr/lib/libxar.1.dylib
>>> 0x7fff8c67c000 - 0x7fff8c690fff com.apple.speech.synthesis.framework (4.1.12 - 4.1.12) <94EDF2AB-809C-3D15-BED5-7AD45B2A7C16> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis
>>> 0x7fff8c698000 - 0x7fff8c6a5ff7 com.apple.NetAuth (4.0 - 4.0) <F5BC7D7D-AF28-3C83-A674-DADA48FF7810> /System/Library/PrivateFrameworks/NetAuth.framework/Versions/A/NetAuth
>>> 0x7fff8c798000 - 0x7fff8c85dff7 com.apple.coreui (2.0 - 181.1) <83D2C92D-6842-3C9D-9289-39D5B4554C3A> /System/Library/PrivateFrameworks/CoreUI.framework/Versions/A/CoreUI
>>> 0x7fff8c85e000 - 0x7fff8c899fff com.apple.LDAPFramework (2.4.28 - 194.5) <67FBDB29-3B9F-309A-BA7C-AA5921D9A4FB> /System/Library/Frameworks/LDAP.framework/Versions/A/LDAP
>>> 0x7fff8c89a000 - 0x7fff8ccb7fff FaceCoreLight (2.4.1) <A34C9575-C4C1-31B1-809B-7751070B4E8B> /System/Library/PrivateFrameworks/FaceCoreLight.framework/Versions/A/FaceCoreLight
>>> 0x7fff8ccc1000 - 0x7fff8ccc4fff libRadiance.dylib (849) <F7D9A0FD-1195-34CB-BFE5-79DAF3F40AC3> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libRadiance.dylib
>>> 0x7fff8cde0000 - 0x7fff8ce3afff com.apple.print.framework.PrintCore (8.3 - 387.2) <5BA0CBED-4D80-386A-9646-F835C9805B71> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/PrintCore.framework/Versions/A/PrintCore
>>> 0x7fff8ce3b000 - 0x7fff8ce60ff7 libc++abi.dylib (26) <D86169F3-9F31-377A-9AF3-DB17142052E4> /usr/lib/libc++abi.dylib
>>> 0x7fff8ce61000 - 0x7fff8ce9bff7 com.apple.GSS (3.0 - 2.0) <970CAE00-1437-3F4E-B677-0FDB3714C08C> /System/Library/Frameworks/GSS.framework/Versions/A/GSS
>>> 0x7fff8cea3000 - 0x7fff8d1d3fff com.apple.HIToolbox (2.0 - 626.1) <656D08C2-9068-3532-ABDD-32EC5057CCB2> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox
>>> 0x7fff8d1d4000 - 0x7fff8d478ff7 com.apple.CoreImage (8.2.4 - 1.0.1) <4A6B017F-B9F7-36DA-943D-A95611F147EA> /System/Library/Frameworks/QuartzCore.framework/Versions/A/Frameworks/CoreImage.framework/Versions/A/CoreImage
>>> 0x7fff8d4fd000 - 0x7fff8d4fdfff libkeymgr.dylib (25) <CC9E3394-BE16-397F-926B-E579B60EE429> /usr/lib/system/libkeymgr.dylib
>>> 0x7fff8d4fe000 - 0x7fff8d503fff com.apple.OpenDirectory (10.8 - 151.10) <CF44120B-9B01-32DD-852E-C9C0E1243FC0> /System/Library/Frameworks/OpenDirectory.framework/Versions/A/OpenDirectory
>>> 0x7fff8d504000 - 0x7fff8d606fff libcrypto.0.9.8.dylib (47) <74F165AD-4572-3B26-B0E2-A97477FE59D0> /usr/lib/libcrypto.0.9.8.dylib
>>> 0x7fff8ddb0000 - 0x7fff8ddb2ff7 libunc.dylib (25) <92805328-CD36-34FF-9436-571AB0485072> /usr/lib/system/libunc.dylib
>>> 0x7fff8ddb3000 - 0x7fff8df9dff7 com.apple.CoreFoundation (6.8 - 744.18) <A60C3C9B-3764-3291-844C-C487ACF77C2C> /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
>>> 0x7fff8dfde000 - 0x7fff8e014fff com.apple.DebugSymbols (98 - 98) <14E788B1-4EB2-3FD7-934B-849534DFC198> /System/Library/PrivateFrameworks/DebugSymbols.framework/Versions/A/DebugSymbols
>>> 0x7fff8e0ca000 - 0x7fff8e0d8fff libcommonCrypto.dylib (60027) <BAAFE0C9-BB86-3CA7-88C0-E3CBA98DA06F> /usr/lib/system/libcommonCrypto.dylib
>>> 0x7fff8e0d9000 - 0x7fff8e11cff7 com.apple.RemoteViewServices (2.0 - 80.6) <5CFA361D-4853-3ACC-9EFC-A2AC1F43BA4B> /System/Library/PrivateFrameworks/RemoteViewServices.framework/Versions/A/RemoteViewServices
>>> 0x7fff8e11d000 - 0x7fff8e11efff liblangid.dylib (116) <864C409D-D56B-383E-9B44-A435A47F2346> /usr/lib/liblangid.dylib
>>> 0x7fff8e480000 - 0x7fff8e4b7ff7 libssl.0.9.8.dylib (47) <923945E6-C489-3406-903B-A362410753F8> /usr/lib/libssl.0.9.8.dylib
>>> 0x7fff8e4b8000 - 0x7fff8e526fff com.apple.framework.IOKit (2.0.1 - 755.22.5) <1547DA6F-9793-30A2-8E92-7368DE84D46C> /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit
>>> 0x7fff8e5e0000 - 0x7fff8e662ff7 com.apple.Heimdal (3.0 - 2.0) <C94B0C6C-1320-35A1-8143-FE252E7B2A08> /System/Library/PrivateFrameworks/Heimdal.framework/Versions/A/Heimdal
>>> 0x7fff8e663000 - 0x7fff8e6cbff7 libc++.1.dylib (65.1) <20E31B90-19B9-3C2A-A9EB-474E08F9FE05> /usr/lib/libc++.1.dylib
>>> 0x7fff8e6cc000 - 0x7fff8e72bfff com.apple.AE (645.6 - 645.6) <44F403C1-660A-3543-AB9C-3902E02F936F> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE
>>> 0x7fff8eae4000 - 0x7fff8eae8fff libGIF.dylib (849) <6A664B4D-0A88-33F7-9064-0CD159AB9CE9> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.dylib
>>> 0x7fff8eae9000 - 0x7fff8eaf1ff7 libsystem_dnssd.dylib (379.37) <616FC901-151E-38BF-B2C4-24A351C5FAAD> /usr/lib/system/libsystem_dnssd.dylib
>>> 0x7fff8ed83000 - 0x7fff8edaafff com.apple.framework.familycontrols (4.1 - 410) <50F5A52C-8FB6-300A-977D-5CFDE4D5796B> /System/Library/PrivateFrameworks/FamilyControls.framework/Versions/A/FamilyControls
>>> 0x7fff8edab000 - 0x7fff8eeadfff libJP2.dylib (849) <4EEA33EB-AF9F-365D-A572-F7D11AD1C76F> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJP2.dylib
>>> 0x7fff8eeae000 - 0x7fff8efcefff com.apple.desktopservices (1.7.3 - 1.7.3) <707F77D2-EC0E-3431-840F-B984BD7ABDD6> /System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/DesktopServicesPriv
>>> 0x7fff8f1b8000 - 0x7fff8f1b9fff libDiagnosticMessagesClient.dylib (8) <8548E0DC-0D2F-30B6-B045-FE8A038E76D8> /usr/lib/libDiagnosticMessagesClient.dylib
>>> 0x7fff8f1ba000 - 0x7fff8f1d0fff com.apple.MultitouchSupport.framework (235.29 - 235.29) <617EC8F1-BCE7-3553-86DD-F857866E1257> /System/Library/PrivateFrameworks/MultitouchSupport.framework/Versions/A/MultitouchSupport
>>> 0x7fff8f343000 - 0x7fff8f371ff7 libsystem_m.dylib (3022.6) <B434BE5C-25AB-3EBD-BAA7-5304B34E3441> /usr/lib/system/libsystem_m.dylib
>>> 0x7fff8f3a1000 - 0x7fff8f3d7fff libsystem_info.dylib (406.17) <4FFCA242-7F04-365F-87A6-D4EFB89503C1> /usr/lib/system/libsystem_info.dylib
>>> 0x7fff8f4c9000 - 0x7fff8f826ff7 com.apple.Foundation (6.8 - 945.16) <89BD68FD-72C8-35C1-94C6-3A07F097C50D> /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation
>>> 0x7fff8f827000 - 0x7fff8f833fff libCSync.A.dylib (331.0.4) <C7043BB7-284D-3B9F-A5CB-78ADE691B2D4> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Resources/libCSync.A.dylib
>>> 0x7fff8f882000 - 0x7fff8f91dfff com.apple.CoreSymbolication (3.0 - 117) <C304FDB8-2FF7-34BC-858A-2B96C2B039D5> /System/Library/PrivateFrameworks/CoreSymbolication.framework/Versions/A/CoreSymbolication
>>> 0x7fff8f91e000 - 0x7fff8f93fff7 libCRFSuite.dylib (33) <736ABE58-8DED-3289-A042-C25AF7AE5B23> /usr/lib/libCRFSuite.dylib
>>> 0x7fff8f940000 - 0x7fff8f97fff7 com.apple.QD (3.42 - 285) <8DF36FCA-C06B-30F4-A631-7BE2FF7E56D1> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/QD.framework/Versions/A/QD
>>> 0x7fff8f9ad000 - 0x7fff8fa07ff7 com.apple.opencl (2.2.18 - 2.2.18) <4A78E53C-17B0-3B2D-A9EA-EF8720FE4134> /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
>>> 0x7fff8fa08000 - 0x7fff8fa09ff7 libdnsinfo.dylib (453.19) <14202FFB-C3CA-3FCC-94B0-14611BF8692D> /usr/lib/system/libdnsinfo.dylib
>>> 0x7fff8fa56000 - 0x7fff8fa67ff7 libsasl2.2.dylib (166) <649CAE0E-8FFE-3C60-A849-BE6300E4B726> /usr/lib/libsasl2.2.dylib
>>> 0x7fff8fa68000 - 0x7fff8fac4ff7 com.apple.Symbolication (1.3 - 93) <F2C7E0B6-B241-3020-B30A-0636D0FA3378> /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
>>> 0x7fff8fc32000 - 0x7fff8fcd8ff7 com.apple.CoreServices.OSServices (557.6 - 557.6) <1BDB5456-0CE9-301C-99C1-8EFD0D2BFCCD> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices
>>> 0x7fff8fe8b000 - 0x7fff8feb2ff7 com.apple.PerformanceAnalysis (1.16 - 16) <E4888388-F41B-313E-9CBB-5807D077BDA9> /System/Library/PrivateFrameworks/PerformanceAnalysis.framework/Versions/A/PerformanceAnalysis
>>> 0x7fff8ff0d000 - 0x7fff8ff2efff com.apple.Ubiquity (1.2 - 243.15) <C9A7EE77-B637-3676-B667-C0843BBB0409> /System/Library/PrivateFrameworks/Ubiquity.framework/Versions/A/Ubiquity
>>> 0x7fff901f3000 - 0x7fff901f3fff com.apple.Accelerate (1.8 - Accelerate 1.8) <6AD48543-0864-3D40-80CE-01F184F24B45> /System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate
>>> 0x7fff901f4000 - 0x7fff9021cfff libJPEG.dylib (849) <5C9052F6-D0B3-39CC-8302-468B43D694D5> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJPEG.dylib
>>> 0x7fff90631000 - 0x7fff90632ff7 libremovefile.dylib (23.2) <6763BC8E-18B8-3AD9-8FFA-B43713A7264F> /usr/lib/system/libremovefile.dylib
>>> 0x7fff90633000 - 0x7fff90633fff com.apple.Accelerate.vecLib (3.8 - vecLib 3.8) <B5A18EE8-DF81-38DD-ACAF-7076B2A26225> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib
>>> 0x7fff90634000 - 0x7fff9064bfff com.apple.CFOpenDirectory (10.8 - 151.10) <FFBBA538-00B5-334E-BA5B-C8AD6CDCDA14> /System/Library/Frameworks/OpenDirectory.framework/Versions/A/Frameworks/CFOpenDirectory.framework/Versions/A/CFOpenDirectory
>>> 0x7fff9068e000 - 0x7fff90696fff liblaunch.dylib (442.26.2) <2F71CAF8-6524-329E-AC56-C506658B4C0C> /usr/lib/system/liblaunch.dylib
>>> 0x7fff90697000 - 0x7fff906aaff7 com.apple.LangAnalysis (1.7.0 - 1.7.0) <2F2694E9-A7BC-33C7-B4CF-8EC907DF0FEB> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis
>>> 0x7fff906ab000 - 0x7fff9103b6ff com.apple.CoreGraphics (1.600.0 - 331.0.4) <4953961C-96DC-39D7-ADF5-B767F2A7E4E1> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/CoreGraphics
>>> 0x7fff910ad000 - 0x7fff910c0ff7 libbsm.0.dylib (32) <F497D3CE-40D9-3551-84B4-3D5E39600737> /usr/lib/libbsm.0.dylib
>>> 0x7fff910f5000 - 0x7fff91d22ff7 com.apple.AppKit (6.8 - 1187.37) <FAEA8B77-210F-3C0F-B9CF-85A7595CCA26> /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
>>> 0x7fff91ffb000 - 0x7fff920f0fff libiconv.2.dylib (34) <FEE8B996-EB44-37FA-B96E-D379664DEFE1> /usr/lib/libiconv.2.dylib
>>> 0x7fff920f1000 - 0x7fff920fcfff libsystem_notify.dylib (98.5) <C49275CC-835A-3207-AFBA-8C01374927B6> /usr/lib/system/libsystem_notify.dylib
>>> 0x7fff920fd000 - 0x7fff92109fff com.apple.CrashReporterSupport (10.8.3 - 417) <48EDDDF3-5720-39D6-B51F-D9AFB93327B3> /System/Library/PrivateFrameworks/CrashReporterSupport.framework/Versions/A/CrashReporterSupport
>>> 0x7fff92184000 - 0x7fff921a6ff7 com.apple.Kerberos (2.0 - 1) <C49B8820-34ED-39D7-A407-A3E854153556> /System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos
>>> 0x7fff921a7000 - 0x7fff921d5fff com.apple.CoreServicesInternal (154.2 - 154.2) <3E6196E6-F3B4-316F-9E1F-13B6B9694C7E> /System/Library/PrivateFrameworks/CoreServicesInternal.framework/Versions/A/CoreServicesInternal
>>> 0x7fff921d6000 - 0x7fff922a8ff7 com.apple.CoreText (260.0 - 275.16) <5BFC1D67-6A6F-38BC-9D90-9C712684EDAC> /System/Library/Frameworks/CoreText.framework/Versions/A/CoreText
>>> 0x7fff922a9000 - 0x7fff922b4fff com.apple.CommonAuth (3.0 - 2.0) <7A953C1F-8B18-3E46-9BEA-26D9B5B7745D> /System/Library/PrivateFrameworks/CommonAuth.framework/Versions/A/CommonAuth
>>> 0x7fff922b5000 - 0x7fff922b5fff com.apple.ApplicationServices (45 - 45) <A3ABF20B-ED3A-32B5-830E-B37831A45A80> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices
>>> 0x7fff922b6000 - 0x7fff92323ff7 com.apple.datadetectorscore (4.1 - 269.2) <4FD4A7CE-BB00-3AAB-B7AA-AE395D5400EC> /System/Library/PrivateFrameworks/DataDetectorsCore.framework/Versions/A/DataDetectorsCore
>>> 0x7fff92328000 - 0x7fff9237dff7 libTIFF.dylib (849) <C4D0E196-9319-319B-AF72-8B63FB5AF71B> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libTIFF.dylib
>>> 0x7fff92522000 - 0x7fff925afff7 com.apple.SearchKit (1.4.0 - 1.4.0) <C7F43889-F8BF-3CB9-AD66-11AEFCBCEDE7> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SearchKit.framework/Versions/A/SearchKit
>>> 0x7fff925b0000 - 0x7fff925b1ff7 libsystem_sandbox.dylib (220.2) <6838A6FD-8626-3356-BB4F-BB4787216207> /usr/lib/system/libsystem_sandbox.dylib
>>> 0x7fff925b2000 - 0x7fff925bdff7 com.apple.bsd.ServiceManagement (2.0 - 2.0) <C12962D5-85FB-349E-AA56-64F4F487F219> /System/Library/Frameworks/ServiceManagement.framework/Versions/A/ServiceManagement
>>> 0x7fff92611000 - 0x7fff92649fff libncurses.5.4.dylib (37.3) <68D5B5F5-8252-3F1E-AFF1-C6AFE145DBC1> /usr/lib/libncurses.5.4.dylib
>>> 0x7fff926db000 - 0x7fff927a7ff7 libsystem_c.dylib (825.26) <4C9EB006-FE1F-3F8F-8074-DFD94CF2CE7B> /usr/lib/system/libsystem_c.dylib
>>> 0x7fff927a8000 - 0x7fff92943fef com.apple.vImage (6.0 - 6.0) <FAE13169-295A-33A5-8E6B-7C2CC1407FA7> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage
>>> 0x7fff92c33000 - 0x7fff92c77fff libcups.2.dylib (327.3) <71E771A1-0489-3417-8A4A-56A2C930F80C> /usr/lib/libcups.2.dylib
>>> 0x7fff92c78000 - 0x7fff92d12fff libvMisc.dylib (380.6) <714336EA-1C0E-3735-B31C-19DFDAAF6221> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib
>>> 0x7fff92d13000 - 0x7fff92d64ff7 com.apple.SystemConfiguration (1.12.2 - 1.12.2) <A4341BBD-A330-3A57-8891-E9C1A286A72D> /System/Library/Frameworks/SystemConfiguration.framework/Versions/A/SystemConfiguration
>>> 0x7fff92dba000 - 0x7fff92ddafff libPng.dylib (849) <F4C23A55-F17B-3E4F-9E80-BC97F778BA49> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib
>>> 0x7fff92e08000 - 0x7fff92e89fff com.apple.Metadata (10.7.0 - 707.5) <4140B1F6-7D73-33C7-B3F2-4DB349C31AE9> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/Metadata.framework/Versions/A/Metadata
>>> 0x7fff93132000 - 0x7fff93134fff libCVMSPluginSupport.dylib (8.7.25) <A45E21E3-4B40-39B0-A8B6-411526A84F47> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
>>> 0x7fff93135000 - 0x7fff93181ff7 libauto.dylib (185.1) <73CDC482-16E3-3FC7-9BB4-FBA2DA44DBC2> /usr/lib/libauto.dylib
>>> 0x7fff93184000 - 0x7fff93189fff libcache.dylib (57) <65187C6E-3FBF-3EB8-A1AA-389445E2984D> /usr/lib/system/libcache.dylib
>>> 0x7fff931e5000 - 0x7fff931ebff7 libunwind.dylib (35.1) <21703D36-2DAB-3D8B-8442-EAAB23C060D3> /usr/lib/system/libunwind.dylib
>>> 0x7fff931ec000 - 0x7fff932e9ff7 libxml2.2.dylib (22.3) <47B09CB2-C636-3024-8B55-6040F7829B4C> /usr/lib/libxml2.2.dylib
>>> 0x7fff932ea000 - 0x7fff9332dff7 com.apple.bom (12.0 - 192) <0BF1F2D2-3648-36B7-BE4B-551A0173209B> /System/Library/PrivateFrameworks/Bom.framework/Versions/A/Bom
>>> 0x7fff93385000 - 0x7fff9349d92f libobjc.A.dylib (532.2) <90D31928-F48D-3E37-874F-220A51FD9E37> /usr/lib/libobjc.A.dylib
>>> 0x7fff934e7000 - 0x7fff934eaff7 libdyld.dylib (210.2.3) <F59367C9-C110-382B-A695-9035A6DD387E> /usr/lib/system/libdyld.dylib
>>> 0x7fff934eb000 - 0x7fff934ebffd com.apple.audio.units.AudioUnit (1.8 - 1.8) <173346B7-614C-380B-8E80-9BD1BE501674> /System/Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit
>>> 0x7fff934f8000 - 0x7fff93535fef libGLImage.dylib (8.7.25) <139A9892-A6F2-3F49-87FB-E7AC3F56E003> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
>>> 0x7fff93536000 - 0x7fff9354dfff com.apple.GenerationalStorage (1.1 - 132.3) <FD4A84B3-13A8-3C60-A59E-25A361447A17> /System/Library/PrivateFrameworks/GenerationalStorage.framework/Versions/A/GenerationalStorage
>>> 0x7fff935ee000 - 0x7fff935fcff7 libkxld.dylib (2050.22.13) <4AAF0573-8632-3D06-BE32-C5675F77638D> /usr/lib/system/libkxld.dylib
>>> 0x7fff935fd000 - 0x7fff93628fff libxslt.1.dylib (11.3) <441776B8-9130-3893-956F-39C85FFA644F> /usr/lib/libxslt.1.dylib
>>> 0x7fff93629000 - 0x7fff93630fff libcopyfile.dylib (89) <876573D0-E907-3566-A108-577EAD1B6182> /usr/lib/system/libcopyfile.dylib
>>> 0x7fff93e5e000 - 0x7fff93ea6fff libcurl.4.dylib (69.2) <EBDBF42D-E4A6-3D05-A76B-2817D79D59E2> /usr/lib/libcurl.4.dylib
>>> 0x7fff93ea7000 - 0x7fff93f0ffff libvDSP.dylib (380.6) <CD4C5EEB-9E63-30C4-8103-7A5EAEA0BE60> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvDSP.dylib
>>> 0x7fff94062000 - 0x7fff94297ff7 com.apple.CoreData (106.1 - 407.7) <24E0A6B4-9ECA-3D12-B26A-72B9DCF09768> /System/Library/Frameworks/CoreData.framework/Versions/A/CoreData
>>> 0x7fff9429b000 - 0x7fff94319ff7 com.apple.securityfoundation (6.0 - 55115.4) <C5461971-E455-31A6-99B8-AF80C4BC26DD> /System/Library/Frameworks/SecurityFoundation.framework/Versions/A/SecurityFoundation
>>> 0x7fff9431b000 - 0x7fff943b9ff7 com.apple.ink.framework (10.8.2 - 150) <84B9825C-3822-375F-BE58-A753444FBDE2> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
>>> 0x7fff95378000 - 0x7fff9568fff7 com.apple.CoreServices.CarbonCore (1037.5 - 1037.5) <731D8F92-1C52-3613-BA01-EFEA54DADF41> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore
>>> 0x7fff95690000 - 0x7fff95710ff7 com.apple.ApplicationServices.ATS (332 - 341.1) <BD83B039-AB25-3E3E-9975-A67DAE66988B> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS
>>> 0x7fff95711000 - 0x7fff95715fff libCGXType.A.dylib (331.0.4) <251D4D2D-92B9-3D56-B348-CD67397F71FE> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Resources/libCGXType.A.dylib
>>> 0x7fff9595f000 - 0x7fff95c30ff7 com.apple.security (7.0 - 55179.11) <73958084-5BBC-3597-A751-7370B0C247E5> /System/Library/Frameworks/Security.framework/Versions/A/Security
>>> 0x7fff95c4d000 - 0x7fff95c51fff libpam.2.dylib (20) <C8F45864-5B58-3237-87E1-2C258A1D73B8> /usr/lib/libpam.2.dylib
>>> 0x7fff95ccf000 - 0x7fff95e44fff com.apple.CFNetwork (596.3.3 - 596.3.3) <3739DC8D-8610-3740-80EC-43E130779CB8> /System/Library/Frameworks/CFNetwork.framework/Versions/A/CFNetwork
>>> 0x7fff95e45000 - 0x7fff95e52fff libbz2.1.0.dylib (29) <CE9785E8-B535-3504-B392-82F0064D9AF2> /usr/lib/libbz2.1.0.dylib
>>> 0x7fff95e53000 - 0x7fff95e59fff com.apple.DiskArbitration (2.5.2 - 2.5.2) <C713A35A-360E-36CE-AC0A-25C86A3F50CA> /System/Library/Frameworks/DiskArbitration.framework/Versions/A/DiskArbitration
>>> 0x7fff95e5a000 - 0x7fff95e5afff com.apple.vecLib (3.8 - vecLib 3.8) <794317C7-4E38-338A-A874-5E18001C8503> /System/Library/Frameworks/vecLib.framework/Versions/A/vecLib
>>> 0x7fff95fbd000 - 0x7fff95fc1fff com.apple.IOSurface (86.0.4 - 86.0.4) <26F01CD4-B76B-37A3-989D-66E8140542B3> /System/Library/Frameworks/IOSurface.framework/Versions/A/IOSurface
>>> 0x7fff963ff000 - 0x7fff965adfff com.apple.QuartzCore (1.8 - 304.2) <234EABE1-067C-3DAE-BEAC-674526E232C2> /System/Library/Frameworks/QuartzCore.framework/Versions/A/QuartzCore
>>> 0x7fff965ae000 - 0x7fff965bcff7 libsystem_network.dylib (77.10) <0D99F24E-56FE-380F-B81B-4A4C630EE587> /usr/lib/system/libsystem_network.dylib
>>> 0x7fff96622000 - 0x7fff96626fff libCoreVMClient.dylib (32.3) <AD8391D9-56DD-3A78-A294-6A30E6ECE1A2> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
>>> 0x7fff96627000 - 0x7fff96701fff com.apple.backup.framework (1.4.2 - 1.4.2) <0B557393-CD2A-3076-BED2-F28D02E1EC1D> /System/Library/PrivateFrameworks/Backup.framework/Versions/A/Backup
>>> 0x7fff96702000 - 0x7fff9674cff7 libGLU.dylib (8.7.25) <C243C6D3-3384-3DB1-BB15-E27B65C87294> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
>>>
>>> External Modification Summary:
>>> Calls made by other processes targeting this process:
>>> task_for_pid: 2
>>> thread_create: 0
>>> thread_set_state: 0
>>> Calls made by this process:
>>> task_for_pid: 0
>>> thread_create: 0
>>> thread_set_state: 0
>>> Calls made by all processes on this machine:
>>> task_for_pid: 18259
>>> thread_create: 2
>>> thread_set_state: 0
>>>
>>> VM Region Summary:
>>> ReadOnly portion of Libraries: Total=154.5M resident=91.3M(59%) swapped_out_or_unallocated=63.1M(41%)
>>> Writable regions: Total=445.0M written=272.1M(61%) resident=289.8M(65%) swapped_out=1276K(0%) unallocated=155.2M(35%)
>>>
>>> REGION TYPE VIRTUAL
>>> =========== =======
>>> ATS (font support) 32.3M
>>> ATS (font support) (reserved) 4K reserved VM address space (unallocated)
>>> CG backing stores 10.3M
>>> CG image 4K
>>> CG raster data 96K
>>> CG shared images 192K
>>> CoreServices 7332K
>>> MALLOC 336.8M
>>> MALLOC guard page 48K
>>> MALLOC_LARGE (reserved) 228K reserved VM address space (unallocated)
>>> Memory tag=242 12K
>>> STACK GUARD 56.0M
>>> Stack 9232K
>>> VM_ALLOCATE 16.1M
>>> __DATA 50.6M
>>> __IMAGE 528K
>>> __LINKEDIT 53.8M
>>> __TEXT 100.6M
>>> __UNICODE 544K
>>> mapped file 59.9M
>>> shared memory 308K
>>> =========== =======
>>> TOTAL 734.5M
>>> TOTAL, minus reserved VM space 734.3M
>>>
>>> Model: MacBookPro10,1, BootROM MBP101.00EE.B02, 4 processors, Intel Core i7, 2.6 GHz, 16 GB, SMC 2.3f35
>>> Graphics: Intel HD Graphics 4000, Intel HD Graphics 4000, Built-In, 512 MB
>>> Graphics: NVIDIA GeForce GT 650M, NVIDIA GeForce GT 650M, PCIe, 1024 MB
>>> Memory Module: BANK 0/DIMM0, 8 GB, DDR3, 1600 MHz, 0x80CE, 0x4D34373142314737334248302D434B302020
>>> Memory Module: BANK 1/DIMM0, 8 GB, DDR3, 1600 MHz, 0x80CE, 0x4D34373142314737334248302D434B302020
>>> AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0xEF), Broadcom BCM43xx 1.0 (5.106.98.100.16)
>>> Bluetooth: Version 4.1.3f3 11349, 2 service, 18 devices, 1 incoming serial ports
>>> Network Service: Wi-Fi, AirPort, en0
>>> Serial ATA Device: APPLE SSD SM512E, 500.28 GB
>>> USB Device: FreeAgent GoFlex, 0x0bc2 (Seagate LLC), 0x5031, 0x14a00000 / 4
>>> USB Device: hub_device, 0x8087 (Intel Corporation), 0x0024, 0x1a100000 / 2
>>> USB Device: FaceTime HD Camera (Built-in), apple_vendor_id, 0x8510, 0x1a110000 / 3
>>> USB Device: hub_device, 0x8087 (Intel Corporation), 0x0024, 0x1d100000 / 2
>>> USB Device: hub_device, 0x0424 (SMSC), 0x2512, 0x1d180000 / 3
>>> USB Device: BRCM20702 Hub, 0x0a5c (Broadcom Corp.), 0x4500, 0x1d181000 / 5
>>> USB Device: Bluetooth USB Host Controller, apple_vendor_id, 0x8286, 0x1d181300 / 6
>>> USB Device: Apple Internal Keyboard / Trackpad, apple_vendor_id, 0x0262, 0x1d182000 / 4
>>> USB Device: hub_device, 0x0424 (SMSC), 0x2514, 0x14100000 / 1
>>> USB Device: ScanSnap S1500, 0x04c5 (Fujitsu Ltd.), 0x11a2, 0x14140000 / 3
>>> USB Device: Microsoft Digital Sound System 80, 0x045e (Microsoft Corporation), 0x0014, 0x14120000 / 2
>>>
>>>
>>>
>>>
>>>
>>> -- output of sessionInfo():
>>>
>>> sessionInfo()
>>> R version 3.0.0 (2013-04-03)
>>> Platform: x86_64-apple-darwin10.8.0 (64-bit)
>>>
>>> locale:
>>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>>>
>>> attached base packages:
>>> [1] parallel grid stats graphics grDevices utils datasets methods base
>>>
>>> other attached packages:
>>> [1] GenomicRanges_1.12.2 IRanges_1.18.0 BiocGenerics_0.6.0 Gviz_1.4.0
>>>
>>> loaded via a namespace (and not attached):
>>> [1] AnnotationDbi_1.22.2 Biobase_2.20.0 biomaRt_2.16.0 Biostrings_2.28.0
>>> [5] biovizBase_1.8.0 bitops_1.0-5 BSgenome_1.28.0 cluster_1.14.4
>>> [9] colorspace_1.2-2 DBI_0.2-6 dichromat_2.0-0 GenomicFeatures_1.12.0
>>> [13] Hmisc_3.10-1 labeling_0.1 lattice_0.20-15 munsell_0.4
>>> [17] plyr_1.8 RColorBrewer_1.0-5 RCurl_1.95-4.1 Rsamtools_1.12.2
>>> [21] RSQLite_0.11.3 rtracklayer_1.20.1 scales_0.2.3 stats4_3.0.0
>>> [25] stringr_0.6.2 tools_3.0.0 XML_3.95-0.2 zlibbioc_1.6.0
>>>
>>> --
>>> Sent via the guest posting facility at bioconductor.org<http://bioconductor.org>.
>>>
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>>>
>>>
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