[BioC] DESeq2
Yemmy [guest]
guest at bioconductor.org
Mon Apr 15 16:16:24 CEST 2013
Hi All,
I decided to give DESeq2 a shot but my progress has been limited due to this annoying error whenever I want to save my results. Please have a look.
write.csv(res, file="AN_WFDEgenes.csv")
Error in as.data.frame.default(x[[i]], optional = TRUE) :
cannot coerce class 'structure("DataFrame", package = "IRanges")' into a data.frame
I don't know how to go about it.
-- output of sessionInfo():
> sessionInfo()
R version 2.15.2 (2012-10-26)
Platform: x86_64-w64-mingw32/x64 (64-bit)
locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] DESeq2_1.0.2 RcppArmadillo_0.3.800.1 Rcpp_0.10.3
[4] GenomicRanges_1.10.7 IRanges_1.16.6 pasilla_0.2.15
[7] DESeq_1.10.1 lattice_0.20-10 locfit_1.5-9
[10] DEXSeq_1.4.0 Biobase_2.18.0 BiocGenerics_0.4.0
loaded via a namespace (and not attached):
[1] annotate_1.36.0 AnnotationDbi_1.20.7 biomaRt_2.14.0
[4] DBI_0.2-5 genefilter_1.40.0 geneplotter_1.36.0
[7] grid_2.15.2 hwriter_1.3 parallel_2.15.2
[10] RColorBrewer_1.0-5 RCurl_1.95-4.1 RSQLite_0.11.2
[13] splines_2.15.2 statmod_1.4.17 stats4_2.15.2
[16] stringr_0.6.2 survival_2.36-14 tools_2.15.2
[19] XML_3.96-1.1 xtable_1.7-1
>
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