[BioC] DESeq2

[Yemmy [guest]]

Hi All,

I decided to give DESeq2 a shot but my progress has been limited due to this annoying error whenever I want to save my results. Please have a look.

write.csv(res, file="AN_WFDEgenes.csv")
Error in as.data.frame.default(x[[i]], optional = TRUE) : 
  cannot coerce class 'structure("DataFrame", package = "IRanges")' into a data.frame

I don't know how to go about it.

 -- output of sessionInfo(): 

> sessionInfo()
R version 2.15.2 (2012-10-26)
Platform: x86_64-w64-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=English_United States.1252 
[2] LC_CTYPE=English_United States.1252   
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C                          
[5] LC_TIME=English_United States.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] DESeq2_1.0.2            RcppArmadillo_0.3.800.1 Rcpp_0.10.3            
 [4] GenomicRanges_1.10.7    IRanges_1.16.6          pasilla_0.2.15         
 [7] DESeq_1.10.1            lattice_0.20-10         locfit_1.5-9           
[10] DEXSeq_1.4.0            Biobase_2.18.0          BiocGenerics_0.4.0     

loaded via a namespace (and not attached):
 [1] annotate_1.36.0      AnnotationDbi_1.20.7 biomaRt_2.14.0      
 [4] DBI_0.2-5            genefilter_1.40.0    geneplotter_1.36.0  
 [7] grid_2.15.2          hwriter_1.3          parallel_2.15.2     
[10] RColorBrewer_1.0-5   RCurl_1.95-4.1       RSQLite_0.11.2      
[13] splines_2.15.2       statmod_1.4.17       stats4_2.15.2       
[16] stringr_0.6.2        survival_2.36-14     tools_2.15.2        
[19] XML_3.96-1.1         xtable_1.7-1        
> 

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