[BioC] Question about edgeR

[Sean Davis]

On Fri, Apr 12, 2013 at 4:50 PM, Abdullah khamis
<abdullahkhamis at gmail.com> wrote:
> Dear edgeR Community,
>
> I have 12 samples that belong to two groups (A and B), 6 samples per group,
> and I want to know which genes are up-regulated in group A and
> down-regulated in B and vice versa.
> I use the functions summary() and the function decideTestsDGE() but I could
> not get the summary information about
> 1) up-regulated genes in Group A
> 2) down-regulated genes in Group A
> 3) up-regulated genes in Group B
> 4) down-regulated genes in Group B

Hi, Abdullah.

You might need to show us what you have tried.  Keep in mind that
genes in #1 above are the same as genes in #4 and that genes in #2 are
the same as #3 when you have two groups.

Sean