[BioC] fRMA for Gene ST arrays

Naxerova, Kamila naxerova at fas.harvard.edu
Wed Apr 3 14:41:14 CEST 2013


Dear list,

to preprocess Affymetrix whole transcript arrays, use of oligo and xps is recommended over the affy package. I am interested in using the GNUSE algorithm to assign quality scores to some arrays, and would also like to try out the barcode function in the frma package. I am now wondering... is frma compatible with whole transcript arrays?

Thanks a lot.
Kamila


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