[BioC] how to find sequence and promoters

[James W. MacDonald]

Hi Leonor,

On 11/30/2012 2:45 PM, lcarvalh at btk.fi wrote:
>>> Hi i am new using bioconductor.i have a table that contains the
>> ensembl_gene_idm the hgnc_symbol and the illumina_humanwg_6_v2 among others.
> that i got by using this function from the biomart package,  getBM().
>>> How can I know the sequence of the genes? and the promoters? is there an
>>> function that does that?

The getSequence() function in biomaRt will do that.

Best,

Jim


>>>
>>> Thank you,
>>>       Leonor
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-- 
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
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Seattle WA 98105-6099