[BioC] identifying sets of correlated genes

[Robert Castelo]

hi,

few more questions,

how many samples do you have?

what is the structure of these data: are all samples from the same 
experimental condition?

do you suspect the presence of some confounding factors such as batch, 
gender (if applicable), strain (if applicable), etc...

are you looking for some specific type of correlated genes, such as 
targets of DNA or RNA binding proteins?


robert.

On 11/26/2012 12:34 PM, Alyaa Mahmoud wrote:
> Hi Dr Castelo
>
> Gene expression dat
>
> Thanks
>
>
> On Mon, Nov 26, 2012 at 1:28 PM, Robert Castelo <robert.castelo at upf.edu
> <mailto:robert.castelo at upf.edu>> wrote:
>
>     hi Alyaa,
>
>     from what kind of data?
>
>     cheers,
>     robert.
>
>
>     On 11/22/2012 10:14 AM, Alyaa Mahmoud wrote:
>
>         Dear Group
>
>         What the most convenient direct way of identifying sets of
>         correlated genes
>         ?
>
>         Thanks a lot
>         Alyaa
>
>
>     --
>     Robert Castelo, PhD
>     Associate Professor
>     Dept. of Experimental and Health Sciences
>     Universitat Pompeu Fabra (UPF)
>     Barcelona Biomedical Research Park (PRBB)
>     Dr Aiguader 88
>     E-08003 Barcelona, Spain
>     telf: +34.933.160.514 <tel:%2B34.933.160.514>
>     fax: +34.933.160.550 <tel:%2B34.933.160.550>
>
>
>
>
> --
> Alyaa Mahmoud
>
> "Love all, trust a few, do wrong to none"- Shakespeare
>

-- 
Robert Castelo, PhD
Associate Professor
Dept. of Experimental and Health Sciences
Universitat Pompeu Fabra (UPF)
Barcelona Biomedical Research Park (PRBB)
Dr Aiguader 88
E-08003 Barcelona, Spain
telf: +34.933.160.514
fax: +34.933.160.550