[BioC] error message in GoSeq in if (matched_frac == 0)
anna [guest]
guest at bioconductor.org
Mon Nov 26 00:00:54 CET 2012
Hello,
I performed an analysis with EdgeR followed by an analysis with GoSeq and then I got this error message, saying there is an error in
if (matched_frac == 0) { :missing value where TRUE/FALSE is required
> pwf=nullp(genes,"hg19","ensGene")
Loading hg19 length data...
Erreur dans if (matched_frac == 0) { :
valeur manquante là où TRUE / FALSE est requis
thank you for your help,
best regards,
anna
-- output of sessionInfo():
R version 2.15.2 (2012-10-26)
Platform: i386-w64-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=French_France.1252 LC_CTYPE=French_France.1252
[3] LC_MONETARY=French_France.1252 LC_NUMERIC=C
[5] LC_TIME=French_France.1252
attached base packages:
[1] splines stats graphics grDevices utils datasets methods
[8] base
other attached packages:
[1] goseq_1.10.0 geneLenDataBase_0.99.10 BiasedUrn_1.04
[4] edgeR_3.0.4 limma_3.14.1
loaded via a namespace (and not attached):
[1] AnnotationDbi_1.20.3 Biobase_2.18.0 BiocGenerics_0.4.0
[4] biomaRt_2.14.0 Biostrings_2.26.2 bitops_1.0-5
[7] BSgenome_1.26.1 DBI_0.2-5 GenomicFeatures_1.10.1
[10] GenomicRanges_1.10.5 grid_2.15.2 IRanges_1.16.4
[13] lattice_0.20-10 Matrix_1.0-10 mgcv_1.7-22
[16] nlme_3.1-105 parallel_2.15.2 RCurl_1.95-3
[19] Rsamtools_1.10.2 RSQLite_0.11.2 rtracklayer_1.18.1
[22] stats4_2.15.2 tools_2.15.2 XML_3.95-0.1
[25] zlibbioc_1.4.0
--
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