[BioC] GenomicFeatures Reading GFF Efficiency

[Dario Strbenac]

Using the command makeTranscriptDbFromGFF("gencode.v13.annotation.gtf", format = "gtf") takes many hours. It seems to take longest at the "Processing splicing information for gtf file." step. Is the code optimised ?

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Dario Strbenac
PhD Student
University of Sydney
Camperdown NSW 2050
Australia