[BioC] GenomicFeatures Reading GFF Efficiency
Dario Strbenac
D.Strbenac at garvan.org.au
Wed Nov 14 06:00:10 CET 2012
Using the command makeTranscriptDbFromGFF("gencode.v13.annotation.gtf", format = "gtf") takes many hours. It seems to take longest at the "Processing splicing information for gtf file." step. Is the code optimised ?
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Dario Strbenac
PhD Student
University of Sydney
Camperdown NSW 2050
Australia
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