[BioC] EdgeR :column sums of counts or library size?
anna [guest]
guest at bioconductor.org
Thu Nov 8 00:58:30 CET 2012
Dear all,
I was wondering wether it would change the results if we provide the initial library size, the mapped reads number or just the sum of counts to perform an RNAseq analysis,
thanks in advance,
anna
-- output of sessionInfo():
R version 2.15.1 (2012-06-22)
Platform: i386-pc-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=French_France.1252 LC_CTYPE=French_France.1252
[3] LC_MONETARY=French_France.1252 LC_NUMERIC=C
[5] LC_TIME=French_France.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] edgeR_3.0.0 limma_3.14.1
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