[BioC] how to get the first hit in each sequence from vmatchPattern results
wang peter
wng.peter at gmail.com
Fri Nov 2 18:51:19 CET 2012
dear ALL
See the example,
result <- vmatchPattern(currentPattern, sread(currentReads),
max.mismatch= max.mismatchs, min.mismatch=0);
startIndex(result)
[[1]]
[1] 1
[[2]]
[1] 1 [2] 2
if i want to get only the [1] element from the [[1]] and [[2]]
what can i do?
thx
--
shan gao
Room 231(Dr.Fei lab)
Boyce Thompson Institute
Cornell University
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