[BioC] Package for doing Copy number analsysi with LOH

Henrik Bengtsson hb at biostat.ucsf.edu
Thu May 31 01:41:05 CEST 2012

If you have paired tumor-normal data, packages aroma.affymetrix and
PSCBS will do this for you.  /Henrik

On Thu, May 17, 2012 at 6:39 PM, Rajan Saini <drsaini22 at yahoo.com> wrote:
> Dear Bioconductor community,
>    I am looking for a package that does Copy number along with LOH analysis (B allele frequency) for intensity files from SNP 6.0 arrays. Please direct me to the right package for this kind of analysis. Thank you very much in advance
> Raj
>        [[alternative HTML version deleted]]
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