[BioC] GEOquery: getGEO() doesn\'t work (error \"invalid \'nlines\' argument\")

[ecsi at gmx.net]

Good morning,

> > mypath <- "C:/Users/bioinf_admin/Desktop/"
> > GSE19711 <- getGEO('GSE19711',destdir=mypath)

I tried this, changing mypath to a mapped network drive directory (Z:/). 
Generally it worked, but files were downloaded to a directory at my 
local hard disk (C:/) which is not desired (see below, sorry for the 
german, R sometimes gives german errors when using german locale 
settings at system level). How can I tell GEOquery that all files must 
be downloaded to the directory given in "mypath"?

>  GSE19711<- getGEO("GSE19711", destdir=mypath)
Found 3 file(s)
GSE19711_series_matrix-1.txt.gz
versuche URL 'ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/SeriesMatrix/GSE19711/GSE19711_series_matrix-1.txt.gz'
using Synchronous WinInet calls
URL geöffnet
downloaded 27.9 Mb

File stored at:
C:\Users\Myuser\AppData\Local\Temp\RtmpOWBTrt/GPL8490.soft
GSE19711_series_matrix-2.txt.gz
versuche URL 'ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/SeriesMatrix/GSE19711/GSE19711_series_matrix-2.txt.gz'
using Synchronous WinInet calls
URL geöffnet
downloaded 27.8 Mb

Using locally cached version of GPL8490 found here:
C:\Users\Myuser\AppData\Local\Temp\RtmpOWBTrt/GPL8490.soft
GSE19711_series_matrix-3.txt.gz
versuche URL 'ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/SeriesMatrix/GSE19711/GSE19711_series_matrix-3.txt.gz'
using Synchronous WinInet calls
URL geöffnet
downloaded 3.5 Mb

Using locally cached version of GPL8490 found here:
C:\Users\Myuser\AppData\Local\Temp\RtmpOWBTrt/GPL8490.soft
Warnmeldung:
In download.file(myurl, destfile, mode = mode, quiet = TRUE, method = getOption("download.file.method.GEOquery")) :
   heruntergeladene Länge 23108257 != angegebener Länge 200


Best,
Simone