[BioC] DESeq error with glm.fit during estimateDispersions
anders at embl.de
Sat May 26 11:24:06 CEST 2012
On 2012-05-24 22:15, chris_utah wrote:
> cdsFull<- estimateDispersions( cdsFull, method="pooled-CR", modelFormula = count ~ sample+allele+allele:diet)
> Error in glm.fit(mm, y, family = MASS::negative.binomial(initialGuess), :
> NA/NaN/Inf in foreign function call (arg 1)
As just discussed off-list with Chris: This was due to a missing "try"
in the code to 'estimateDispersion'.
I have just fixed the issue in DESeq version 1.8.3 (release) and 1.9.7
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