[BioC] GEOquery loading error
Jian Zhang [guest]
guest at bioconductor.org
Sat May 26 00:39:40 CEST 2012
I was able to download and install GEOquery, but can't seem to load it into R. See the following error message included. Also included some potentially useful info.
I use R version: 2.15.0, Bioconductor 2.10.
Thanks.
-- output of sessionInfo():
>library(GEOquery)
Error in loadNamespace(i[[1L]], c(lib.loc, .libPaths())) :
there is no package called âRCurlâ
Error: package/namespace load failed for âGEOqueryâ
>traceback()
2: stop(gettextf("package/namespace load failed for %s", sQuote(package)),
call. = FALSE, domain = NA)
1: library(GEOquery)
> biocLite("RCurl")
BioC_mirror: http://bioconductor.org
Using R version 2.15, BiocInstaller version 1.4.4.
Installing package(s) 'RCurl'
Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/2.15
Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/2.15
> sessionInfo()
R version 2.15.0 (2012-03-30)
Platform: i386-pc-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] hgu133plus2hsrefseq.db_15.1.0 hgu133plus2hsrefseqcdf_15.1.0
[3] hgu133plus2cdf_2.10.0 hgu133plus2.db_2.7.1
[5] org.Hs.eg.db_2.7.1 RSQLite_0.11.1
[7] DBI_0.2-5 altcdfenvs_2.18.0
[9] hypergraph_1.28.0 graph_1.34.0
[11] Biostrings_2.24.1 IRanges_1.14.3
[13] makecdfenv_1.34.0 ecoliprobe_2.10.0
[15] gcrma_2.28.0 arrayQualityMetrics_3.12.0
[17] ecoliLeucine_1.2.8 ecolicdf_2.10.0
[19] AnnotationDbi_1.18.0 affy_1.34.0
[21] Biobase_2.16.0 BiocGenerics_0.2.0
[23] BiocInstaller_1.4.4
loaded via a namespace (and not attached):
[1] affyio_1.24.0 affyPLM_1.32.0 annotate_1.34.0
[4] beadarray_2.6.0 BeadDataPackR_1.8.0 Cairo_1.5-1
[7] cluster_1.14.2 colorspace_1.1-1 genefilter_1.38.0
[10] grid_2.15.0 Hmisc_3.9-3 hwriter_1.3
[13] KernSmooth_2.23-7 lattice_0.20-6 latticeExtra_0.6-19
[16] limma_3.12.0 plyr_1.7.1 preprocessCore_1.18.0
[19] RColorBrewer_1.0-5 reshape2_1.2.1 setRNG_2011.11-2
[22] splines_2.15.0 stats4_2.15.0 stringr_0.6
[25] survival_2.36-14 SVGAnnotation_0.9-0 tools_2.15.0
[28] vsn_3.24.0 XML_3.9-4.1 xtable_1.7-0
[31] zlibbioc_1.2.0
Warning message:
package âRCurlâ is not available (for R version 2.15.0)
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