[BioC] Query neighboring genes

[Zhu, Lihua (Julie)]

Yadav,

You could try annotatePeakInBatch in ChIPpeakAnno package.

Best regards,

Julie


On 5/17/12 12:40 PM, "Yadav Sapkota" <ysapkota at ualberta.ca> wrote:

> Hi,
> 
> Is there any tool or package that can query neighboring genes (lets say 100
> KB upstream and downstream) of a specific chromosomal range (chr1:100-200)?
> I have thousands of these chromosomal ranges.
> 
> You help will be greatly appreciated.
> 
> Regards,
> Yadav Sapkota
> Uni of Alberta
> 
> [[alternative HTML version deleted]]
> 
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