[BioC] Query neighboring genes
Zhu, Lihua (Julie)
Julie.Zhu at umassmed.edu
Thu May 17 18:52:24 CEST 2012
You could try annotatePeakInBatch in ChIPpeakAnno package.
On 5/17/12 12:40 PM, "Yadav Sapkota" <ysapkota at ualberta.ca> wrote:
> Is there any tool or package that can query neighboring genes (lets say 100
> KB upstream and downstream) of a specific chromosomal range (chr1:100-200)?
> I have thousands of these chromosomal ranges.
> You help will be greatly appreciated.
> Yadav Sapkota
> Uni of Alberta
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