[BioC] GO analysis for CNVs

Zhu, Lihua (Julie) Julie.Zhu at umassmed.edu
Wed May 9 21:35:24 CEST 2012


You might want to try getEnrichedGO function in ChIPpeakAnno package.

Best regards,


On 5/9/12 3:31 PM, "Yadav Sapkota" <ysapkota at ualberta.ca> wrote:

> Hi,
> I have some candidate CNVs (with chromosomal start and end position known)
> but these are not in the gene regions but located upstream or downstream of
> some genes.
> Is there any tool or R package where I can use CNV information (as input)
> and use some options that will allow me to conduct the GO analysis for
> genes located some bps upstream or downstream of the CNVs?
> You help will be greatly appreciated.
> Regards,
> Yadav Sapkota
> Uni of Alberta
> [[alternative HTML version deleted]]
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