[BioC] LIMMA: plotMDS

Steve Lianoglou mailinglist.honeypot at gmail.com
Mon May 7 15:12:21 CEST 2012


On Sun, May 6, 2012 at 7:21 PM, Kripa R <kripa777 at hotmail.com> wrote:
> Hi I was wondering how I can figure out which genes correspond to each of the principle components ($cmdscale.out). Gene.selection is set to pairwise for the top 500 but I'd like to know exactly which genes are being considered for cmdscale.out[,3], for example.

Perhaps you'd like to tell us what you did, exactly?

without some reproducible code examples, we're left guessing as to
what commands you've run and where `$cmdscale.out` comes from, etc.


Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact

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