[BioC] lumiHumanIDMapping package does not exist for windows?

[Dan Tenenbaum]

On Thu, May 3, 2012 at 9:42 PM, Ekta Jain <Ekta_Jain at jubilantbiosys.com> wrote:
> Hi Dan,
> Found the windows package at http://bioc.ism.ac.jp/2.8/data/annotation/html/lumiHumanIDMapping.html
>
> I am going to download and use this as a locally downloaded package. It is version 1.10 which I think is the latest version?


The type="source" flag to biocLite() installs the .tar.gz (source)
package, or at least it is supposed to. I'm not sure why it isn't
working for you.

The link you sent above says the version is 1.10.0.

Dan




>
> Regards,
> Ekta
>
> -----Original Message-----
> From: Dan Tenenbaum [mailto:dtenenba at fhcrc.org]
> Sent: 04 May 2012 09:25
> To: Ekta Jain
> Cc: bioconductor at r-project.org
> Subject: Re: [BioC] lumiHumanIDMapping package does not exist for windows?
>
> On Thu, May 3, 2012 at 8:35 PM, Ekta Jain <Ekta_Jain at jubilantbiosys.com> wrote:
>> Dear Dan,
>> That wouldn't work as well. If we don't have the package available on Bioconductor.org then biocLite will not be able to download it.
>>
>
> What is the exact error message, and the output of sessionInfo()?
>
> Also what is the output of
>  getOption("BioC_mirror")
> ?
>
>> I did originally start with the way you suggested. When it didn't work thought of downloading the relevant .gz file from Bioconductor, which is not available.
>>
>
>
> The .gz file is available, see the you emailed. However, biocLite() is
> the preferred way to install it, so let's figure out why that is not
> working.
> Dan
>
>
>> Any help would be great !!!
>>
>> Thanks,
>> Ekta
>>
>> -----Original Message-----
>> From: Dan Tenenbaum [mailto:dtenenba at fhcrc.org]
>> Sent: 03 May 2012 23:22
>> To: Ekta Jain
>> Cc: bioconductor at r-project.org
>> Subject: Re: [BioC] lumiHumanIDMapping package does not exist for windows?
>>
>> On Thu, May 3, 2012 at 4:39 AM, Ekta Jain <Ekta_Jain at jubilantbiosys.com> wrote:
>>> Dear All,
>>> The lumiHumanIDMapping package does not seem to have the windows binary files available on the Bioconductor website - http://www.bioconductor.org/packages/release/data/annotation/html/lumiHumanIDMapping.html
>>>
>>> Can anyone please tell me where i can get the same .gz package from?
>>
>> I'll look into why this is not available for windows, but in the
>> meantime you can install it as follows:
>>
>> source("http://bioconductor.org/biocLite.R")
>> biocLite("lumiHumanIDMapping", type="source")
>>
>> Dan
>>
>>>
>>> Many Thanks,
>>> Ekta
>>> Senior Research Associate
>>> Bioinformatics Department
>>> Jubilant Biosys Pvt Ltd,
>>> #96, Industrial Suburb, 2nd Stage
>>> Yeshwantpur, Bangalore 560 022
>>> Ph No : +91-80-66628346
>>>
>>>
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