[BioC] fitmaanova

Maxime Deraspe [guest] guest at bioconductor.org
Sat Mar 31 03:36:16 CEST 2012


I get this error when I try to run a fitmaanova on my data.

anova.fix<-fitmaanova(mydata_norm, formula= ~Array+Dye+Treatment)
Error in ma.svd(X, 0, 0) : 
  BLAS/LAPACK routine 'DORGLQ' gave error code -5
In addition: Warning message:
In any(parsed.formula$random) :
  coercing argument of type 'double' to logical

I'm a newbie in R. I'm working on arch linux and I tried with lapack and blas packages, I also try it with the complete atlas-lapack package but the same error came with bot try. 

Does anyone have any ideas what could causing this and how to resolve it.

Thank you.

 -- output of sessionInfo(): 

R version 2.15.0 (2012-03-30)
Platform: x86_64-unknown-linux-gnu (64-bit)

 [1] LC_CTYPE=en_US.utf8       LC_NUMERIC=C             
 [3] LC_TIME=en_US.utf8        LC_COLLATE=en_US.utf8    
 [5] LC_MONETARY=en_US.utf8    LC_MESSAGES=en_US.utf8   
 [7] LC_PAPER=C                LC_NAME=C                
 [9] LC_ADDRESS=C              LC_TELEPHONE=C           

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] maanova_1.25.1

loaded via a namespace (and not attached):
[1] Biobase_2.15.4      BiocGenerics_0.1.14

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